FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6312, 280 aa
  1>>>pF1KB6312 280 - 280 aa - 280 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0374+/-0.000329; mu= 13.4202+/- 0.021
 mean_var=103.0279+/-20.148, 0's: 0 Z-trim(117.6): 12  B-trim: 1664 in 1/53
 Lambda= 0.126356
 statistics sampled from 29777 (29788) to 29777 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.349), width:  16
 Scan time:  6.250

The best scores are:                                      opt bits E(85289)
NP_060571 (OMIM: 609977) borealin [Homo sapiens]   ( 280) 1776 333.7 2.3e-91
NP_001243804 (OMIM: 609977) borealin [Homo sapiens ( 280) 1776 333.7 2.3e-91


>>NP_060571 (OMIM: 609977) borealin [Homo sapiens]        (280 aa)
 initn: 1776 init1: 1776 opt: 1776  Z-score: 1761.2  bits: 333.7 E(85289): 2.3e-91
Smith-Waterman score: 1776; 100.0% identity (100.0% similar) in 280 aa overlap (1-280:1-280)

               10        20        30        40        50        60
pF1KB6 MAPRKGSSRVAKTNSLRRRKLASFLKDFDREVEIRIKQIESDRQNLLKEVDNLYNIEILR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MAPRKGSSRVAKTNSLRRRKLASFLKDFDREVEIRIKQIESDRQNLLKEVDNLYNIEILR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LPKALREMNWLDYFALGGNKQALEEAATADLDITEINKLTAEAIQTPLKSAKTRKVIQVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LPKALREMNWLDYFALGGNKQALEEAATADLDITEINKLTAEAIQTPLKSAKTRKVIQVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EMIVEEEEEEENERKNLQTARVKRCPPSKKRTQSIQGKGKGKRSSRANTVTPAVGRLEVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EMIVEEEEEEENERKNLQTARVKRCPPSKKRTQSIQGKGKGKRSSRANTVTPAVGRLEVS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 MVKPTPGLTPRFDSRVFKTPGLRTPAAGERIYNISGNGSPLADSKEIFLTVPVGGGESLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MVKPTPGLTPRFDSRVFKTPGLRTPAAGERIYNISGNGSPLADSKEIFLTVPVGGGESLR
              190       200       210       220       230       240

              250       260       270       280
pF1KB6 LLASDLQRHSIAQLDPEALGNIKKLSNRLAQICSSIRTHK
       ::::::::::::::::::::::::::::::::::::::::
NP_060 LLASDLQRHSIAQLDPEALGNIKKLSNRLAQICSSIRTHK
              250       260       270       280

>>NP_001243804 (OMIM: 609977) borealin [Homo sapiens]     (280 aa)
 initn: 1776 init1: 1776 opt: 1776  Z-score: 1761.2  bits: 333.7 E(85289): 2.3e-91
Smith-Waterman score: 1776; 100.0% identity (100.0% similar) in 280 aa overlap (1-280:1-280)

               10        20        30        40        50        60
pF1KB6 MAPRKGSSRVAKTNSLRRRKLASFLKDFDREVEIRIKQIESDRQNLLKEVDNLYNIEILR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAPRKGSSRVAKTNSLRRRKLASFLKDFDREVEIRIKQIESDRQNLLKEVDNLYNIEILR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LPKALREMNWLDYFALGGNKQALEEAATADLDITEINKLTAEAIQTPLKSAKTRKVIQVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPKALREMNWLDYFALGGNKQALEEAATADLDITEINKLTAEAIQTPLKSAKTRKVIQVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EMIVEEEEEEENERKNLQTARVKRCPPSKKRTQSIQGKGKGKRSSRANTVTPAVGRLEVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EMIVEEEEEEENERKNLQTARVKRCPPSKKRTQSIQGKGKGKRSSRANTVTPAVGRLEVS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 MVKPTPGLTPRFDSRVFKTPGLRTPAAGERIYNISGNGSPLADSKEIFLTVPVGGGESLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVKPTPGLTPRFDSRVFKTPGLRTPAAGERIYNISGNGSPLADSKEIFLTVPVGGGESLR
              190       200       210       220       230       240

              250       260       270       280
pF1KB6 LLASDLQRHSIAQLDPEALGNIKKLSNRLAQICSSIRTHK
       ::::::::::::::::::::::::::::::::::::::::
NP_001 LLASDLQRHSIAQLDPEALGNIKKLSNRLAQICSSIRTHK
              250       260       270       280




280 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:40:49 2016 done: Fri Nov  4 22:40:49 2016
 Total Scan time:  6.250 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]