Result of FASTA (omim) for
pF1KB6317
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6317, 260 aa
1>>>pF1KB6317 260 - 260 aa - 260 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.8411+/-0.000332; mu= -1.8302+/- 0.021
mean_var=153.4978+/-30.866, 0's: 0 Z-trim(119.5): 15 B-trim: 0 in 0/58
Lambda= 0.103520
statistics sampled from 33513 (33528) to 33513 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.731), E-opt: 0.2 (0.393), width: 16
Scan time: 7.780
The best scores are: opt bits E(85289)
NP_060926 (OMIM: 607659) ELL-associated factor 2 i ( 260) 1710 266.5 3.3e-71
XP_016862352 (OMIM: 607659) PREDICTED: ELL-associa ( 263) 1619 253.0 4.2e-67
XP_005247675 (OMIM: 607659) PREDICTED: ELL-associa ( 271) 1469 230.6 2.4e-60
XP_016862351 (OMIM: 607659) PREDICTED: ELL-associa ( 130) 858 139.2 3.6e-33
NP_001306970 (OMIM: 607659) ELL-associated factor ( 130) 858 139.2 3.6e-33
XP_016862350 (OMIM: 607659) PREDICTED: ELL-associa ( 130) 858 139.2 3.6e-33
NP_149074 (OMIM: 608315) ELL-associated factor 1 [ ( 268) 667 110.8 2.7e-24
XP_011532468 (OMIM: 608315) PREDICTED: ELL-associa ( 167) 297 55.5 7.5e-08
XP_005265575 (OMIM: 608315) PREDICTED: ELL-associa ( 167) 297 55.5 7.5e-08
XP_011532467 (OMIM: 608315) PREDICTED: ELL-associa ( 167) 297 55.5 7.5e-08
>>NP_060926 (OMIM: 607659) ELL-associated factor 2 isofo (260 aa)
initn: 1710 init1: 1710 opt: 1710 Z-score: 1399.3 bits: 266.5 E(85289): 3.3e-71
Smith-Waterman score: 1710; 100.0% identity (100.0% similar) in 260 aa overlap (1-260:1-260)
10 20 30 40 50 60
pF1KB6 MNSAAGFSHLDRRERVLKLGESFEKQPRCAFHTVRYDFKPASIDTSSEGYLEVGEGEQVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MNSAAGFSHLDRRERVLKLGESFEKQPRCAFHTVRYDFKPASIDTSSEGYLEVGEGEQVT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ITLPNIEGSTPPVTVFKGSKKPYLKECILIINHDTGECRLEKLSSNITVKKTRVEGSSKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ITLPNIEGSTPPVTVFKGSKKPYLKECILIINHDTGECRLEKLSSNITVKKTRVEGSSKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 QYRKEQQQQQMWNSARTPNLVKHSPSEDKMSPASPIDDIERELKAEASLMDQMSSCDSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 QYRKEQQQQQMWNSARTPNLVKHSPSEDKMSPASPIDDIERELKAEASLMDQMSSCDSSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DSKSSSSSSSEDSSSDSEDEDCKSSTSDTGNCVSGHPTMTQYRIPDIDASHNRFRDNSGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 DSKSSSSSSSEDSSSDSEDEDCKSSTSDTGNCVSGHPTMTQYRIPDIDASHNRFRDNSGL
190 200 210 220 230 240
250 260
pF1KB6 LMNTLRNDLQLSESGSDSDD
::::::::::::::::::::
NP_060 LMNTLRNDLQLSESGSDSDD
250 260
>>XP_016862352 (OMIM: 607659) PREDICTED: ELL-associated (263 aa)
initn: 1893 init1: 1619 opt: 1619 Z-score: 1325.8 bits: 253.0 E(85289): 4.2e-67
Smith-Waterman score: 1619; 99.6% identity (99.6% similar) in 247 aa overlap (1-247:1-247)
10 20 30 40 50 60
pF1KB6 MNSAAGFSHLDRRERVLKLGESFEKQPRCAFHTVRYDFKPASIDTSSEGYLEVGEGEQVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNSAAGFSHLDRRERVLKLGESFEKQPRCAFHTVRYDFKPASIDTSSEGYLEVGEGEQVT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ITLPNIEGSTPPVTVFKGSKKPYLKECILIINHDTGECRLEKLSSNITVKKTRVEGSSKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ITLPNIEGSTPPVTVFKGSKKPYLKECILIINHDTGECRLEKLSSNITVKKTRVEGSSKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 QYRKEQQQQQMWNSARTPNLVKHSPSEDKMSPASPIDDIERELKAEASLMDQMSSCDSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QYRKEQQQQQMWNSARTPNLVKHSPSEDKMSPASPIDDIERELKAEASLMDQMSSCDSSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DSKSSSSSSSEDSSSDSEDEDCKSSTSDTGNCVSGHPTMTQYRIPDIDASHNRFRDNSGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DSKSSSSSSSEDSSSDSEDEDCKSSTSDTGNCVSGHPTMTQYRIPDIDASHNRFRDNSGL
190 200 210 220 230 240
250 260
pF1KB6 LMNTLRNDLQLSESGSDSDD
::::: :
XP_016 LMNTLNNLSSHSFSSLYDPLLSH
250 260
>>XP_005247675 (OMIM: 607659) PREDICTED: ELL-associated (271 aa)
initn: 1465 init1: 1465 opt: 1469 Z-score: 1204.5 bits: 230.6 E(85289): 2.4e-60
Smith-Waterman score: 1469; 97.8% identity (98.3% similar) in 230 aa overlap (31-260:42-271)
10 20 30 40 50 60
pF1KB6 MNSAAGFSHLDRRERVLKLGESFEKQPRCAFHTVRYDFKPASIDTSSEGYLEVGEGEQVT
: . ::::::::::::::::::::::::
XP_005 LSSVPFSGSVICVFIWFFHAFFSNSIYSLLFSSFSDDFKPASIDTSSEGYLEVGEGEQVT
20 30 40 50 60 70
70 80 90 100 110 120
pF1KB6 ITLPNIEGSTPPVTVFKGSKKPYLKECILIINHDTGECRLEKLSSNITVKKTRVEGSSKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ITLPNIEGSTPPVTVFKGSKKPYLKECILIINHDTGECRLEKLSSNITVKKTRVEGSSKI
80 90 100 110 120 130
130 140 150 160 170 180
pF1KB6 QYRKEQQQQQMWNSARTPNLVKHSPSEDKMSPASPIDDIERELKAEASLMDQMSSCDSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QYRKEQQQQQMWNSARTPNLVKHSPSEDKMSPASPIDDIERELKAEASLMDQMSSCDSSS
140 150 160 170 180 190
190 200 210 220 230 240
pF1KB6 DSKSSSSSSSEDSSSDSEDEDCKSSTSDTGNCVSGHPTMTQYRIPDIDASHNRFRDNSGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DSKSSSSSSSEDSSSDSEDEDCKSSTSDTGNCVSGHPTMTQYRIPDIDASHNRFRDNSGL
200 210 220 230 240 250
250 260
pF1KB6 LMNTLRNDLQLSESGSDSDD
::::::::::::::::::::
XP_005 LMNTLRNDLQLSESGSDSDD
260 270
>>XP_016862351 (OMIM: 607659) PREDICTED: ELL-associated (130 aa)
initn: 858 init1: 858 opt: 858 Z-score: 716.5 bits: 139.2 E(85289): 3.6e-33
Smith-Waterman score: 858; 100.0% identity (100.0% similar) in 130 aa overlap (131-260:1-130)
110 120 130 140 150 160
pF1KB6 EKLSSNITVKKTRVEGSSKIQYRKEQQQQQMWNSARTPNLVKHSPSEDKMSPASPIDDIE
::::::::::::::::::::::::::::::
XP_016 MWNSARTPNLVKHSPSEDKMSPASPIDDIE
10 20 30
170 180 190 200 210 220
pF1KB6 RELKAEASLMDQMSSCDSSSDSKSSSSSSSEDSSSDSEDEDCKSSTSDTGNCVSGHPTMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RELKAEASLMDQMSSCDSSSDSKSSSSSSSEDSSSDSEDEDCKSSTSDTGNCVSGHPTMT
40 50 60 70 80 90
230 240 250 260
pF1KB6 QYRIPDIDASHNRFRDNSGLLMNTLRNDLQLSESGSDSDD
::::::::::::::::::::::::::::::::::::::::
XP_016 QYRIPDIDASHNRFRDNSGLLMNTLRNDLQLSESGSDSDD
100 110 120 130
>>NP_001306970 (OMIM: 607659) ELL-associated factor 2 is (130 aa)
initn: 858 init1: 858 opt: 858 Z-score: 716.5 bits: 139.2 E(85289): 3.6e-33
Smith-Waterman score: 858; 100.0% identity (100.0% similar) in 130 aa overlap (131-260:1-130)
110 120 130 140 150 160
pF1KB6 EKLSSNITVKKTRVEGSSKIQYRKEQQQQQMWNSARTPNLVKHSPSEDKMSPASPIDDIE
::::::::::::::::::::::::::::::
NP_001 MWNSARTPNLVKHSPSEDKMSPASPIDDIE
10 20 30
170 180 190 200 210 220
pF1KB6 RELKAEASLMDQMSSCDSSSDSKSSSSSSSEDSSSDSEDEDCKSSTSDTGNCVSGHPTMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RELKAEASLMDQMSSCDSSSDSKSSSSSSSEDSSSDSEDEDCKSSTSDTGNCVSGHPTMT
40 50 60 70 80 90
230 240 250 260
pF1KB6 QYRIPDIDASHNRFRDNSGLLMNTLRNDLQLSESGSDSDD
::::::::::::::::::::::::::::::::::::::::
NP_001 QYRIPDIDASHNRFRDNSGLLMNTLRNDLQLSESGSDSDD
100 110 120 130
>>XP_016862350 (OMIM: 607659) PREDICTED: ELL-associated (130 aa)
initn: 858 init1: 858 opt: 858 Z-score: 716.5 bits: 139.2 E(85289): 3.6e-33
Smith-Waterman score: 858; 100.0% identity (100.0% similar) in 130 aa overlap (131-260:1-130)
110 120 130 140 150 160
pF1KB6 EKLSSNITVKKTRVEGSSKIQYRKEQQQQQMWNSARTPNLVKHSPSEDKMSPASPIDDIE
::::::::::::::::::::::::::::::
XP_016 MWNSARTPNLVKHSPSEDKMSPASPIDDIE
10 20 30
170 180 190 200 210 220
pF1KB6 RELKAEASLMDQMSSCDSSSDSKSSSSSSSEDSSSDSEDEDCKSSTSDTGNCVSGHPTMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RELKAEASLMDQMSSCDSSSDSKSSSSSSSEDSSSDSEDEDCKSSTSDTGNCVSGHPTMT
40 50 60 70 80 90
230 240 250 260
pF1KB6 QYRIPDIDASHNRFRDNSGLLMNTLRNDLQLSESGSDSDD
::::::::::::::::::::::::::::::::::::::::
XP_016 QYRIPDIDASHNRFRDNSGLLMNTLRNDLQLSESGSDSDD
100 110 120 130
>>NP_149074 (OMIM: 608315) ELL-associated factor 1 [Homo (268 aa)
initn: 865 init1: 597 opt: 667 Z-score: 557.2 bits: 110.8 E(85289): 2.7e-24
Smith-Waterman score: 847; 54.7% identity (73.2% similar) in 276 aa overlap (1-260:1-268)
10 20 30 40 50 60
pF1KB6 MNSAAGFSHLDRRERVLKLGESFEKQPRCAFHTVRYDFKPASIDTSSEGYLEVGEGEQVT
::..:. :::.:. :.:::::::.:: .:::.:::::::::::: :: :.::.:..::
NP_149 MNGTAN-PLLDREEHCLRLGESFEKRPRASFHTIRYDFKPASIDTSCEGELQVGKGDEVT
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 ITLPNIEGSTPPVTVFKGSKKPYLKECILIINHDTGECRLEKLSSNITVKKTRVEGSSKI
::::.: :::::.:::::.:.:: :.:.::::::::: ::::::.: :::::.::::::
NP_149 ITLPHIPGSTPPMTVFKGNKRPYQKDCVLIINHDTGEYVLEKLSSSIQVKKTRAEGSSKI
60 70 80 90 100 110
130 140 150 160
pF1KB6 QYRKEQQQQQMWNSA---------------RTPNLVKHSPSEDKMSPASPIDDIERELKA
: : ::: . ... . : : :: .:. :: .:::.:::.:
NP_149 QARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRA
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB6 EASLMDQMSSCDSSSDSKSSSSSSSEDSSSDSEDEDCKSSTSDTGNCVSGHPTMTQ-YRI
:.....:::: ..::.: : :::.:.:.::.: :: .: .:. : :
NP_149 EVDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGED-------NGPASPPQPSHQQPYNS
180 190 200 210 220 230
230 240 250 260
pF1KB6 PDIDASHNRFRDNSGLLMNTLRNDLQLSESGSDSDD
:. . ..:. ::::::::::::::::::::
NP_149 RPAVANGTSRPQGSNQLMNTLRNDLQLSESGSDSDD
240 250 260
>>XP_011532468 (OMIM: 608315) PREDICTED: ELL-associated (167 aa)
initn: 338 init1: 192 opt: 297 Z-score: 262.0 bits: 55.5 E(85289): 7.5e-08
Smith-Waterman score: 320; 40.8% identity (62.1% similar) in 174 aa overlap (103-260:1-167)
80 90 100 110 120 130
pF1KB6 VTVFKGSKKPYLKECILIINHDTGECRLEKLSSNITVKKTRVEGSSKIQYRKEQQQQQMW
..:.. . . .::::::: : ::: .
XP_011 MKSQLHCHISLAEGSSKIQARMEQQPTRPP
10 20 30
140 150 160 170
pF1KB6 NSA---------------RTPNLVKHSPSEDKMSPASPIDDIERELKAEASLMDQMSSCD
... . : : :: .:. :: .:::.:::.::.....:::: .
XP_011 QTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAEVDIIEQMSSSS
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB6 SSSDSKSSSSSSSEDSSSDSEDEDCKSSTSDTGNCVSGHPTMTQ-YRIPDIDASHNRFRD
.::.: : :::.:.:.::.: :: .: .:. : : :. . .
XP_011 GSSSSDSESSSGSDDDSSSSGGED-------NGPASPPQPSHQQPYNSRPAVANGTSRPQ
100 110 120 130 140
240 250 260
pF1KB6 NSGLLMNTLRNDLQLSESGSDSDD
.:. ::::::::::::::::::::
XP_011 GSNQLMNTLRNDLQLSESGSDSDD
150 160
>>XP_005265575 (OMIM: 608315) PREDICTED: ELL-associated (167 aa)
initn: 338 init1: 192 opt: 297 Z-score: 262.0 bits: 55.5 E(85289): 7.5e-08
Smith-Waterman score: 320; 40.8% identity (62.1% similar) in 174 aa overlap (103-260:1-167)
80 90 100 110 120 130
pF1KB6 VTVFKGSKKPYLKECILIINHDTGECRLEKLSSNITVKKTRVEGSSKIQYRKEQQQQQMW
..:.. . . .::::::: : ::: .
XP_005 MKSQLHCHISLAEGSSKIQARMEQQPTRPP
10 20 30
140 150 160 170
pF1KB6 NSA---------------RTPNLVKHSPSEDKMSPASPIDDIERELKAEASLMDQMSSCD
... . : : :: .:. :: .:::.:::.::.....:::: .
XP_005 QTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAEVDIIEQMSSSS
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB6 SSSDSKSSSSSSSEDSSSDSEDEDCKSSTSDTGNCVSGHPTMTQ-YRIPDIDASHNRFRD
.::.: : :::.:.:.::.: :: .: .:. : : :. . .
XP_005 GSSSSDSESSSGSDDDSSSSGGED-------NGPASPPQPSHQQPYNSRPAVANGTSRPQ
100 110 120 130 140
240 250 260
pF1KB6 NSGLLMNTLRNDLQLSESGSDSDD
.:. ::::::::::::::::::::
XP_005 GSNQLMNTLRNDLQLSESGSDSDD
150 160
>>XP_011532467 (OMIM: 608315) PREDICTED: ELL-associated (167 aa)
initn: 338 init1: 192 opt: 297 Z-score: 262.0 bits: 55.5 E(85289): 7.5e-08
Smith-Waterman score: 320; 40.8% identity (62.1% similar) in 174 aa overlap (103-260:1-167)
80 90 100 110 120 130
pF1KB6 VTVFKGSKKPYLKECILIINHDTGECRLEKLSSNITVKKTRVEGSSKIQYRKEQQQQQMW
..:.. . . .::::::: : ::: .
XP_011 MKSQLHCHISLAEGSSKIQARMEQQPTRPP
10 20 30
140 150 160 170
pF1KB6 NSA---------------RTPNLVKHSPSEDKMSPASPIDDIERELKAEASLMDQMSSCD
... . : : :: .:. :: .:::.:::.::.....:::: .
XP_011 QTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAEVDIIEQMSSSS
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB6 SSSDSKSSSSSSSEDSSSDSEDEDCKSSTSDTGNCVSGHPTMTQ-YRIPDIDASHNRFRD
.::.: : :::.:.:.::.: :: .: .:. : : :. . .
XP_011 GSSSSDSESSSGSDDDSSSSGGED-------NGPASPPQPSHQQPYNSRPAVANGTSRPQ
100 110 120 130 140
240 250 260
pF1KB6 NSGLLMNTLRNDLQLSESGSDSDD
.:. ::::::::::::::::::::
XP_011 GSNQLMNTLRNDLQLSESGSDSDD
150 160
260 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 19:25:23 2016 done: Fri Nov 4 19:25:24 2016
Total Scan time: 7.780 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]