FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6319, 260 aa
  1>>>pF1KB6319 260 - 260 aa - 260 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5482+/-0.000804; mu= 13.8058+/- 0.048
 mean_var=70.1522+/-13.987, 0's: 0 Z-trim(107.5): 17  B-trim: 3 in 1/50
 Lambda= 0.153128
 statistics sampled from 9595 (9603) to 9595 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.295), width:  16
 Scan time:  2.020

The best scores are:                                      opt bits E(32554)
CCDS34488.1 IRAK1BP1 gene_id:134728|Hs108|chr6     ( 260) 1675 378.8  2e-105


>>CCDS34488.1 IRAK1BP1 gene_id:134728|Hs108|chr6          (260 aa)
 initn: 1675 init1: 1675 opt: 1675  Z-score: 2006.0  bits: 378.8 E(32554): 2e-105
Smith-Waterman score: 1675; 100.0% identity (100.0% similar) in 260 aa overlap (1-260:1-260)

               10        20        30        40        50        60
pF1KB6 MSLQKTPPTRVFVELVPWADRSRENNLASGRETLPGLRHPLSSTQAQTATREVQVSGTSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MSLQKTPPTRVFVELVPWADRSRENNLASGRETLPGLRHPLSSTQAQTATREVQVSGTSE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VSAGPDRAQVVVRVSSTKEAAAEAKKSVCRRLDYITQSLQQQGVQAENITVTKDFRRVEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VSAGPDRAQVVVRVSSTKEAAAEAKKSVCRRLDYITQSLQQQGVQAENITVTKDFRRVEN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 AYHMEAEVCITFTEFGKMQNICNFLVEKLDSSVVISPPQFYHTPGSVENLRRQACLVAVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AYHMEAEVCITFTEFGKMQNICNFLVEKLDSSVVISPPQFYHTPGSVENLRRQACLVAVE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 NAWRKAQEVCNLVGQTLGKPLLIKEEETKEWEGQIDDHQSSRLSSSLTVQQKIKSATIHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NAWRKAQEVCNLVGQTLGKPLLIKEEETKEWEGQIDDHQSSRLSSSLTVQQKIKSATIHA
              190       200       210       220       230       240

              250       260
pF1KB6 ASKVFITFEVKGKEKRKKHL
       ::::::::::::::::::::
CCDS34 ASKVFITFEVKGKEKRKKHL
              250       260




260 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:41:29 2016 done: Fri Nov  4 22:41:29 2016
 Total Scan time:  2.020 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]