FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6320, 282 aa
  1>>>pF1KB6320 282 - 282 aa - 282 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.2950+/-0.00112; mu= -2.0980+/- 0.068
 mean_var=451.1082+/-94.150, 0's: 0 Z-trim(115.6): 9  B-trim: 161 in 1/53
 Lambda= 0.060386
 statistics sampled from 16156 (16160) to 16156 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.788), E-opt: 0.2 (0.496), width:  16
 Scan time:  2.080

The best scores are:                                      opt bits E(32554)
CCDS12565.1 SNRPA gene_id:6626|Hs108|chr19         ( 282) 1917 180.3 1.4e-45
CCDS13123.1 SNRPB2 gene_id:6629|Hs108|chr20        ( 225)  614 66.6 1.8e-11


>>CCDS12565.1 SNRPA gene_id:6626|Hs108|chr19              (282 aa)
 initn: 1917 init1: 1917 opt: 1917  Z-score: 931.7  bits: 180.3 E(32554): 1.4e-45
Smith-Waterman score: 1917; 100.0% identity (100.0% similar) in 282 aa overlap (1-282:1-282)

               10        20        30        40        50        60
pF1KB6 MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 TKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 PPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV
              190       200       210       220       230       240

              250       260       270       280  
pF1KB6 PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK
       ::::::::::::::::::::::::::::::::::::::::::
CCDS12 PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK
              250       260       270       280  

>>CCDS13123.1 SNRPB2 gene_id:6629|Hs108|chr20             (225 aa)
 initn: 634 init1: 597 opt: 614  Z-score: 319.3  bits: 66.6 E(32554): 1.8e-11
Smith-Waterman score: 949; 56.5% identity (72.7% similar) in 278 aa overlap (5-282:2-225)

               10        20        30        40        50        60
pF1KB6 MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK
           . ::::::::::.:.::::.:::.::::.:::::...::.. ...:::::::::::
CCDS13    MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFK
                  10        20        30        40        50       

               70        80        90       100       110       120
pF1KB6 EVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPA
       :..:.:::::..:::::: :::::::::::::::.::.:::.....:.::.: :. :  :
CCDS13 ELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTA
        60        70        80        90       100       110       

              130       140       150       160       170       180
pF1KB6 TKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQI
       :    . : .::  . .::                            .  : :     :.
CCDS13 TTTNKKPGQGTPNSANTQG----------------------------NSTPNP-----QV
       120       130                                   140         

              190       200       210       220       230       240
pF1KB6 PPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV
       :                     . :::.::::.::::::::.::::::::::::::::::
CCDS13 P---------------------DYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLV
                               150       160       170       180   

              250       260       270       280  
pF1KB6 PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK
       :::::::::::.:. ::::::::::::::: ..::::..:::
CCDS13 PGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK
           190       200       210       220     




282 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:30:15 2016 done: Fri Nov  4 20:30:16 2016
 Total Scan time:  2.080 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]