FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6324, 282 aa
  1>>>pF1KB6324 282 - 282 aa - 282 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7659+/-0.000431; mu= 17.8243+/- 0.027
 mean_var=62.0598+/-12.199, 0's: 0 Z-trim(110.6): 23  B-trim: 0 in 0/50
 Lambda= 0.162806
 statistics sampled from 18933 (18938) to 18933 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.596), E-opt: 0.2 (0.222), width:  16
 Scan time:  6.060

The best scores are:                                      opt bits E(85289)
NP_002844 (OMIM: 603153) cell cycle checkpoint pro ( 282) 1866 447.1 1.8e-125


>>NP_002844 (OMIM: 603153) cell cycle checkpoint protein  (282 aa)
 initn: 1866 init1: 1866 opt: 1866  Z-score: 2373.7  bits: 447.1 E(85289): 1.8e-125
Smith-Waterman score: 1866; 100.0% identity (100.0% similar) in 282 aa overlap (1-282:1-282)

               10        20        30        40        50        60
pF1KB6 MPLLTQQIQDEDDQYSLVASLDNVRNLSTILKAIHFREHATCFATKNGIKVTVENAKCVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MPLLTQQIQDEDDQYSLVASLDNVRNLSTILKAIHFREHATCFATKNGIKVTVENAKCVQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ANAFIQAGIFQEFKVQEESVTFRINLTVLLDCLSIFGSSPMPGTLTALRMCYQGYGYPLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ANAFIQAGIFQEFKVQEESVTFRINLTVLLDCLSIFGSSPMPGTLTALRMCYQGYGYPLM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LFLEEGGVVTVCKINTQEPEETLDFDFCSTNVINKIILQSEGLREAFSELDMTSEVLQIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LFLEEGGVVTVCKINTQEPEETLDFDFCSTNVINKIILQSEGLREAFSELDMTSEVLQIT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 MSPDKPYFRLSTFGNAGSSHLDYPKDSDLMEAFHCNQTQVNRYKISLLKPSTKALVLSCK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MSPDKPYFRLSTFGNAGSSHLDYPKDSDLMEAFHCNQTQVNRYKISLLKPSTKALVLSCK
              190       200       210       220       230       240

              250       260       270       280  
pF1KB6 VSIRTDNRGFLSLQYMIRNEDGQICFVEYYCCPDEEVPESES
       ::::::::::::::::::::::::::::::::::::::::::
NP_002 VSIRTDNRGFLSLQYMIRNEDGQICFVEYYCCPDEEVPESES
              250       260       270       280  




282 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:10:25 2016 done: Fri Nov  4 19:10:26 2016
 Total Scan time:  6.060 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]