FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6326, 286 aa
  1>>>pF1KB6326 286 - 286 aa - 286 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5559+/-0.000815; mu= 9.9040+/- 0.049
 mean_var=111.0479+/-21.636, 0's: 0 Z-trim(110.8): 9  B-trim: 5 in 1/51
 Lambda= 0.121708
 statistics sampled from 11916 (11918) to 11916 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.366), width:  16
 Scan time:  2.010

The best scores are:                                      opt bits E(32554)
CCDS4499.1 SSR1 gene_id:6745|Hs108|chr6            ( 286) 1862 337.3 7.7e-93
CCDS78109.1 SSR1 gene_id:6745|Hs108|chr6           ( 218)  822 154.6 5.8e-38


>>CCDS4499.1 SSR1 gene_id:6745|Hs108|chr6                 (286 aa)
 initn: 1862 init1: 1862 opt: 1862  Z-score: 1780.2  bits: 337.3 E(32554): 7.7e-93
Smith-Waterman score: 1862; 100.0% identity (100.0% similar) in 286 aa overlap (1-286:1-286)

               10        20        30        40        50        60
pF1KB6 MRLLPRLLLLLLLVFPATVLFRGGPRGLLAVAQDLTEDEETVEDSIIEDEDDEAEVEEDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MRLLPRLLLLLLLVFPATVLFRGGPRGLLAVAQDLTEDEETVEDSIIEDEDDEAEVEEDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PTDLVEDKEEEDVSGEPEASPSADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PTDLVEDKEEEDVSGEPEASPSADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 DASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 NGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGLHQLLESRKRKRPIQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGLHQLLESRKRKRPIQK
              190       200       210       220       230       240

              250       260       270       280      
pF1KB6 VEMGTSSQNDVDMSWIPQETLNQINKASPRRLPRKRAQKRSVGSDE
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VEMGTSSQNDVDMSWIPQETLNQINKASPRRLPRKRAQKRSVGSDE
              250       260       270       280      

>>CCDS78109.1 SSR1 gene_id:6745|Hs108|chr6                (218 aa)
 initn: 860 init1: 822 opt: 822  Z-score: 795.0  bits: 154.6 E(32554): 5.8e-38
Smith-Waterman score: 1260; 76.2% identity (76.2% similar) in 286 aa overlap (1-286:1-218)

               10        20        30        40        50        60
pF1KB6 MRLLPRLLLLLLLVFPATVLFRGGPRGLLAVAQDLTEDEETVEDSIIEDEDDEAEVEEDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MRLLPRLLLLLLLVFPATVLFRGGPRGLLAVAQDLTEDEETVEDSIIEDEDDEAEVEEDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PTDLVEDKEEEDVSGEPEASPSADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESL
       :::::::::::::::::::::::::::::::::                           
CCDS78 PTDLVEDKEEEDVSGEPEASPSADTTILFVKGE---------------------------
               70        80        90                              

              130       140       150       160       170       180
pF1KB6 DASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDL
                                                :::::::::::::::::::
CCDS78 -----------------------------------------EPMGGRPFGLVINLNYKDL
                                                    100       110  

              190       200       210       220       230       240
pF1KB6 NGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGLHQLLESRKRKRPIQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 NGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGLHQLLESRKRKRPIQK
            120       130       140       150       160       170  

              250       260       270       280      
pF1KB6 VEMGTSSQNDVDMSWIPQETLNQINKASPRRLPRKRAQKRSVGSDE
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 VEMGTSSQNDVDMSWIPQETLNQINKASPRRLPRKRAQKRSVGSDE
            180       190       200       210        




286 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:42:05 2016 done: Fri Nov  4 22:42:05 2016
 Total Scan time:  2.010 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]