FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6327, 261 aa
  1>>>pF1KB6327 261 - 261 aa - 261 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9984+/-0.00093; mu= 4.6761+/- 0.056
 mean_var=231.4845+/-49.155, 0's: 0 Z-trim(113.3): 113  B-trim: 0 in 0/51
 Lambda= 0.084297
 statistics sampled from 13857 (13974) to 13857 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.429), width:  16
 Scan time:  2.480

The best scores are:                                      opt bits E(32554)
CCDS11331.1 LASP1 gene_id:3927|Hs108|chr17         ( 261) 1822 233.7 9.8e-62
CCDS62164.1 LASP1 gene_id:3927|Hs108|chr17         ( 205) 1224 160.9 6.5e-40
CCDS7133.1 NEBL gene_id:10529|Hs108|chr10          ( 270) 1102 146.2 2.3e-35


>>CCDS11331.1 LASP1 gene_id:3927|Hs108|chr17              (261 aa)
 initn: 1822 init1: 1822 opt: 1822  Z-score: 1221.8  bits: 233.7 E(32554): 9.8e-62
Smith-Waterman score: 1822; 100.0% identity (100.0% similar) in 261 aa overlap (1-261:1-261)

               10        20        30        40        50        60
pF1KB6 MNPNCARCGKIVYPTEKVNCLDKFWHKACFHCETCKMTLNMKNYKGYEKKPYCNAHYPKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MNPNCARCGKIVYPTEKVNCLDKFWHKACFHCETCKMTLNMKNYKGYEKKPYCNAHYPKQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SFTMVADTPENLRLKQQSELQSQVRYKEEFEKNKGKGFSVVADTPELQRIKKTQDQISNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SFTMVADTPENLRLKQQSELQSQVRYKEEFEKNKGKGFSVVADTPELQRIKKTQDQISNI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KYHEEFEKSRMGPSGGEGMEPERRDSQDGSSYRRPLEQQQPHHIPTSAPVYQQPQQQPVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KYHEEFEKSRMGPSGGEGMEPERRDSQDGSSYRRPLEQQQPHHIPTSAPVYQQPQQQPVA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 QSYGGYKEPAAPVSIQRSAPGGGGKRYRAVYDYSAADEDEVSFQDGDTIVNVQQIDDGWM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QSYGGYKEPAAPVSIQRSAPGGGGKRYRAVYDYSAADEDEVSFQDGDTIVNVQQIDDGWM
              190       200       210       220       230       240

              250       260 
pF1KB6 YGTVERTGDTGMLPANYVEAI
       :::::::::::::::::::::
CCDS11 YGTVERTGDTGMLPANYVEAI
              250       260 

>>CCDS62164.1 LASP1 gene_id:3927|Hs108|chr17              (205 aa)
 initn: 1218 init1: 1218 opt: 1224  Z-score: 830.0  bits: 160.9 E(32554): 6.5e-40
Smith-Waterman score: 1224; 96.3% identity (98.9% similar) in 188 aa overlap (74-261:19-205)

            50        60        70        80        90       100   
pF1KB6 YKGYEKKPYCNAHYPKQSFTMVADTPENLRLKQQSELQSQVRYKEEFEKNKGKGFSVVAD
                                     :.... :: .::::::::::::::::::::
CCDS62             MLPLRDLQDDTEHEELQGLREEALLQ-RVRYKEEFEKNKGKGFSVVAD
                           10        20         30        40       

           110       120       130       140       150       160   
pF1KB6 TPELQRIKKTQDQISNIKYHEEFEKSRMGPSGGEGMEPERRDSQDGSSYRRPLEQQQPHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 TPELQRIKKTQDQISNIKYHEEFEKSRMGPSGGEGMEPERRDSQDGSSYRRPLEQQQPHH
        50        60        70        80        90       100       

           170       180       190       200       210       220   
pF1KB6 IPTSAPVYQQPQQQPVAQSYGGYKEPAAPVSIQRSAPGGGGKRYRAVYDYSAADEDEVSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 IPTSAPVYQQPQQQPVAQSYGGYKEPAAPVSIQRSAPGGGGKRYRAVYDYSAADEDEVSF
       110       120       130       140       150       160       

           230       240       250       260 
pF1KB6 QDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVEAI
       ::::::::::::::::::::::::::::::::::::::
CCDS62 QDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVEAI
       170       180       190       200     

>>CCDS7133.1 NEBL gene_id:10529|Hs108|chr10               (270 aa)
 initn: 1153 init1: 813 opt: 1102  Z-score: 748.4  bits: 146.2 E(32554): 2.3e-35
Smith-Waterman score: 1130; 62.8% identity (81.2% similar) in 277 aa overlap (1-261:1-269)

               10        20        30        40        50        60
pF1KB6 MNPNCARCGKIVYPTEKVNCLDKFWHKACFHCETCKMTLNMKNYKGYEKKPYCNAHYPKQ
       :::.::::::.::::::::::::.:::.:::::.:::.:::.::::::::::::::::::
CCDS71 MNPQCARCGKVVYPTEKVNCLDKYWHKGCFHCEVCKMALNMNNYKGYEKKPYCNAHYPKQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SFTMVADTPENLRLKQQSELQSQVRYKEEFEKNKGKGFSVVADTPELQRIKKTQDQISNI
       ::: ::::::::::::::::::::.::..::..::.:::.:.:::::::.:.::.::::.
CCDS71 SFTTVADTPENLRLKQQSELQSQVKYKRDFEESKGRGFSIVTDTPELQRLKRTQEQISNV
               70        80        90       100       110       120

              130       140                  150           160     
pF1KB6 KYHEEFEKSRMGPSGGEGMEPE---------RRDSQ--DGSSYR--RP--LEQQQPHHIP
       ::::.:::..     :.:. :          :...:  . ..:.  .:  .:...   : 
CCDS71 KYHEDFEKTK-----GRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGII
              130            140       150       160       170     

         170       180       190       200        210       220    
pF1KB6 TSAPVYQQPQQQPVAQSYGGYKEPAAPVSIQRSAPGGGGKR-YRAVYDYSAADEDEVSFQ
       . :::     ::  .:.:: ... .  :: .::   . . : :::.::::: :::::::.
CCDS71 V-APVLPGAYQQSHSQGYGYMHQTS--VSSMRSMQHSPNLRTYRAMYDYSAQDEDEVSFR
          180       190         200       210       220       230  

          230       240       250       260  
pF1KB6 DGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVEAI 
       ::: ::::: ::::::::::.::: ::::::::.: . 
CCDS71 DGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFVN
            240       250       260       270




261 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:30:49 2016 done: Fri Nov  4 20:30:50 2016
 Total Scan time:  2.480 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]