Result of FASTA (omim) for
pF1KB6327
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6327, 261 aa
1>>>pF1KB6327 261 - 261 aa - 261 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.6997+/-0.000418; mu= 7.2380+/- 0.026
mean_var=324.6228+/-70.262, 0's: 0 Z-trim(120.4): 234 B-trim: 0 in 0/56
Lambda= 0.071184
statistics sampled from 35378 (35705) to 35378 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.419), width: 16
Scan time: 7.350
The best scores are: opt bits E(85289)
NP_006139 (OMIM: 602920) LIM and SH3 domain protei ( 261) 1822 200.1 3.3e-51
NP_001258537 (OMIM: 602920) LIM and SH3 domain pro ( 205) 1224 138.5 9e-33
NP_998734 (OMIM: 605491) nebulette isoform 2 [Homo ( 270) 1102 126.2 6.2e-29
NP_001166955 (OMIM: 605491) nebulette isoform 3 [H ( 224) 818 96.9 3.4e-20
XP_005252400 (OMIM: 605491) PREDICTED: nebulette i ( 933) 501 65.3 4.6e-10
XP_005252399 (OMIM: 605491) PREDICTED: nebulette i ( 980) 367 51.6 6.6e-06
XP_016870957 (OMIM: 605491) PREDICTED: nebulette i ( 998) 367 51.6 6.7e-06
XP_011517593 (OMIM: 605491) PREDICTED: nebulette i ( 998) 367 51.6 6.7e-06
XP_016870956 (OMIM: 605491) PREDICTED: nebulette i ( 998) 367 51.6 6.7e-06
NP_006384 (OMIM: 605491) nebulette isoform 1 [Homo (1014) 367 51.6 6.7e-06
XP_005269924 (OMIM: 602873) PREDICTED: nebulin-rel (1627) 351 50.2 2.7e-05
NP_001309874 (OMIM: 602873) nebulin-related-anchor (1694) 351 50.3 2.8e-05
XP_011538134 (OMIM: 602873) PREDICTED: nebulin-rel (1695) 351 50.3 2.8e-05
XP_005269922 (OMIM: 602873) PREDICTED: nebulin-rel (1695) 351 50.3 2.8e-05
NP_006166 (OMIM: 602873) nebulin-related-anchoring (1695) 351 50.3 2.8e-05
XP_005269921 (OMIM: 602873) PREDICTED: nebulin-rel (1696) 351 50.3 2.8e-05
XP_006717933 (OMIM: 602873) PREDICTED: nebulin-rel (1696) 351 50.3 2.8e-05
NP_932326 (OMIM: 602873) nebulin-related-anchoring (1730) 351 50.3 2.8e-05
NP_001248392 (OMIM: 602873) nebulin-related-anchor (1731) 351 50.3 2.8e-05
NP_004534 (OMIM: 161650,256030) nebulin isoform 3 (6669) 342 50.2 0.00011
XP_011509529 (OMIM: 161650,256030) PREDICTED: nebu (7067) 342 50.3 0.00012
XP_005246674 (OMIM: 161650,256030) PREDICTED: nebu (7553) 342 50.3 0.00012
XP_011509528 (OMIM: 161650,256030) PREDICTED: nebu (7796) 342 50.3 0.00012
XP_016859674 (OMIM: 161650,256030) PREDICTED: nebu (8184) 342 50.4 0.00013
XP_011509527 (OMIM: 161650,256030) PREDICTED: nebu (8277) 342 50.4 0.00013
XP_016859673 (OMIM: 161650,256030) PREDICTED: nebu (8277) 342 50.4 0.00013
XP_005246672 (OMIM: 161650,256030) PREDICTED: nebu (8277) 342 50.4 0.00013
XP_016859672 (OMIM: 161650,256030) PREDICTED: nebu (8277) 342 50.4 0.00013
XP_005246670 (OMIM: 161650,256030) PREDICTED: nebu (8282) 342 50.4 0.00013
XP_005246669 (OMIM: 161650,256030) PREDICTED: nebu (8282) 342 50.4 0.00013
XP_005246668 (OMIM: 161650,256030) PREDICTED: nebu (8308) 342 50.4 0.00013
XP_016859671 (OMIM: 161650,256030) PREDICTED: nebu (8308) 342 50.4 0.00013
XP_005246667 (OMIM: 161650,256030) PREDICTED: nebu (8308) 342 50.4 0.00013
XP_005246665 (OMIM: 161650,256030) PREDICTED: nebu (8339) 342 50.4 0.00013
XP_016859670 (OMIM: 161650,256030) PREDICTED: nebu (8339) 342 50.4 0.00013
XP_016859668 (OMIM: 161650,256030) PREDICTED: nebu (8370) 342 50.4 0.00013
XP_016859669 (OMIM: 161650,256030) PREDICTED: nebu (8370) 342 50.4 0.00013
XP_005246661 (OMIM: 161650,256030) PREDICTED: nebu (8370) 342 50.4 0.00013
XP_006712604 (OMIM: 161650,256030) PREDICTED: nebu (8370) 342 50.4 0.00013
XP_005246663 (OMIM: 161650,256030) PREDICTED: nebu (8370) 342 50.4 0.00013
XP_005246660 (OMIM: 161650,256030) PREDICTED: nebu (8370) 342 50.4 0.00013
XP_006712605 (OMIM: 161650,256030) PREDICTED: nebu (8370) 342 50.4 0.00013
XP_005246658 (OMIM: 161650,256030) PREDICTED: nebu (8401) 342 50.4 0.00013
XP_005246659 (OMIM: 161650,256030) PREDICTED: nebu (8401) 342 50.4 0.00013
XP_005246657 (OMIM: 161650,256030) PREDICTED: nebu (8432) 342 50.4 0.00013
XP_005246656 (OMIM: 161650,256030) PREDICTED: nebu (8432) 342 50.4 0.00013
XP_005246655 (OMIM: 161650,256030) PREDICTED: nebu (8463) 342 50.4 0.00013
XP_005246653 (OMIM: 161650,256030) PREDICTED: nebu (8463) 342 50.4 0.00013
XP_016859667 (OMIM: 161650,256030) PREDICTED: nebu (8463) 342 50.4 0.00013
XP_005246654 (OMIM: 161650,256030) PREDICTED: nebu (8463) 342 50.4 0.00013
>>NP_006139 (OMIM: 602920) LIM and SH3 domain protein 1 (261 aa)
initn: 1822 init1: 1822 opt: 1822 Z-score: 1040.2 bits: 200.1 E(85289): 3.3e-51
Smith-Waterman score: 1822; 100.0% identity (100.0% similar) in 261 aa overlap (1-261:1-261)
10 20 30 40 50 60
pF1KB6 MNPNCARCGKIVYPTEKVNCLDKFWHKACFHCETCKMTLNMKNYKGYEKKPYCNAHYPKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MNPNCARCGKIVYPTEKVNCLDKFWHKACFHCETCKMTLNMKNYKGYEKKPYCNAHYPKQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 SFTMVADTPENLRLKQQSELQSQVRYKEEFEKNKGKGFSVVADTPELQRIKKTQDQISNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SFTMVADTPENLRLKQQSELQSQVRYKEEFEKNKGKGFSVVADTPELQRIKKTQDQISNI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 KYHEEFEKSRMGPSGGEGMEPERRDSQDGSSYRRPLEQQQPHHIPTSAPVYQQPQQQPVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 KYHEEFEKSRMGPSGGEGMEPERRDSQDGSSYRRPLEQQQPHHIPTSAPVYQQPQQQPVA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 QSYGGYKEPAAPVSIQRSAPGGGGKRYRAVYDYSAADEDEVSFQDGDTIVNVQQIDDGWM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 QSYGGYKEPAAPVSIQRSAPGGGGKRYRAVYDYSAADEDEVSFQDGDTIVNVQQIDDGWM
190 200 210 220 230 240
250 260
pF1KB6 YGTVERTGDTGMLPANYVEAI
:::::::::::::::::::::
NP_006 YGTVERTGDTGMLPANYVEAI
250 260
>>NP_001258537 (OMIM: 602920) LIM and SH3 domain protein (205 aa)
initn: 1218 init1: 1218 opt: 1224 Z-score: 709.4 bits: 138.5 E(85289): 9e-33
Smith-Waterman score: 1224; 96.3% identity (98.9% similar) in 188 aa overlap (74-261:19-205)
50 60 70 80 90 100
pF1KB6 YKGYEKKPYCNAHYPKQSFTMVADTPENLRLKQQSELQSQVRYKEEFEKNKGKGFSVVAD
:.... :: .::::::::::::::::::::
NP_001 MLPLRDLQDDTEHEELQGLREEALLQ-RVRYKEEFEKNKGKGFSVVAD
10 20 30 40
110 120 130 140 150 160
pF1KB6 TPELQRIKKTQDQISNIKYHEEFEKSRMGPSGGEGMEPERRDSQDGSSYRRPLEQQQPHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TPELQRIKKTQDQISNIKYHEEFEKSRMGPSGGEGMEPERRDSQDGSSYRRPLEQQQPHH
50 60 70 80 90 100
170 180 190 200 210 220
pF1KB6 IPTSAPVYQQPQQQPVAQSYGGYKEPAAPVSIQRSAPGGGGKRYRAVYDYSAADEDEVSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IPTSAPVYQQPQQQPVAQSYGGYKEPAAPVSIQRSAPGGGGKRYRAVYDYSAADEDEVSF
110 120 130 140 150 160
230 240 250 260
pF1KB6 QDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVEAI
::::::::::::::::::::::::::::::::::::::
NP_001 QDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVEAI
170 180 190 200
>>NP_998734 (OMIM: 605491) nebulette isoform 2 [Homo sap (270 aa)
initn: 1153 init1: 813 opt: 1102 Z-score: 640.5 bits: 126.2 E(85289): 6.2e-29
Smith-Waterman score: 1130; 62.8% identity (81.2% similar) in 277 aa overlap (1-261:1-269)
10 20 30 40 50 60
pF1KB6 MNPNCARCGKIVYPTEKVNCLDKFWHKACFHCETCKMTLNMKNYKGYEKKPYCNAHYPKQ
:::.::::::.::::::::::::.:::.:::::.:::.:::.::::::::::::::::::
NP_998 MNPQCARCGKVVYPTEKVNCLDKYWHKGCFHCEVCKMALNMNNYKGYEKKPYCNAHYPKQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 SFTMVADTPENLRLKQQSELQSQVRYKEEFEKNKGKGFSVVADTPELQRIKKTQDQISNI
::: ::::::::::::::::::::.::..::..::.:::.:.:::::::.:.::.::::.
NP_998 SFTTVADTPENLRLKQQSELQSQVKYKRDFEESKGRGFSIVTDTPELQRLKRTQEQISNV
70 80 90 100 110 120
130 140 150 160
pF1KB6 KYHEEFEKSRMGPSGGEGMEPE---------RRDSQ--DGSSYR--RP--LEQQQPHHIP
::::.:::.. :.:. : :...: . ..:. .: .:... :
NP_998 KYHEDFEKTK-----GRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGII
130 140 150 160 170
170 180 190 200 210 220
pF1KB6 TSAPVYQQPQQQPVAQSYGGYKEPAAPVSIQRSAPGGGGKR-YRAVYDYSAADEDEVSFQ
. ::: :: .:.:: ... . :: .:: . . : :::.::::: :::::::.
NP_998 V-APVLPGAYQQSHSQGYGYMHQTS--VSSMRSMQHSPNLRTYRAMYDYSAQDEDEVSFR
180 190 200 210 220 230
230 240 250 260
pF1KB6 DGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVEAI
::: ::::: ::::::::::.::: ::::::::.: .
NP_998 DGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFVN
240 250 260 270
>>NP_001166955 (OMIM: 605491) nebulette isoform 3 [Homo (224 aa)
initn: 846 init1: 813 opt: 818 Z-score: 483.7 bits: 96.9 E(85289): 3.4e-20
Smith-Waterman score: 830; 60.1% identity (80.8% similar) in 213 aa overlap (1-198:1-205)
10 20 30 40 50 60
pF1KB6 MNPNCARCGKIVYPTEKVNCLDKFWHKACFHCETCKMTLNMKNYKGYEKKPYCNAHYPKQ
:::.::::::.::::::::::::.:::.:::::.:::.:::.::::::::::::::::::
NP_001 MNPQCARCGKVVYPTEKVNCLDKYWHKGCFHCEVCKMALNMNNYKGYEKKPYCNAHYPKQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 SFTMVADTPENLRLKQQSELQSQVRYKEEFEKNKGKGFSVVADTPELQRIKKTQDQISNI
::: ::::::::::::::::::::.::..::..::.:::.:.:::::::.:.::.::::.
NP_001 SFTTVADTPENLRLKQQSELQSQVKYKRDFEESKGRGFSIVTDTPELQRLKRTQEQISNV
70 80 90 100 110 120
130 140 150 160
pF1KB6 KYHEEFEKSRMGPSGGEGMEPE---------RRDSQ--DGSSYR--RP--LEQQQPHHIP
::::.:::.. :.:. : :...: . ..:. .: .:... :
NP_001 KYHEDFEKTK-----GRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGII
130 140 150 160 170
170 180 190 200 210 220
pF1KB6 TSAPVYQQPQQQPVAQSYGGYKEPAAPVSIQRSAPGGGGKRYRAVYDYSAADEDEVSFQD
. ::: :: .:.:: ... . :: .::
NP_001 V-APVLPGAYQQSHSQGYGYMHQTS--VSSMRSMQHSPNLDLPSHVRLQCPG
180 190 200 210 220
230 240 250 260
pF1KB6 GDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVEAI
>>XP_005252400 (OMIM: 605491) PREDICTED: nebulette isofo (933 aa)
initn: 561 init1: 321 opt: 501 Z-score: 301.6 bits: 65.3 E(85289): 4.6e-10
Smith-Waterman score: 506; 42.4% identity (67.5% similar) in 231 aa overlap (49-261:711-932)
20 30 40 50 60 70
pF1KB6 NCLDKFWHKACFHCETCKMTLNMKNYKGYEKKPYCNAHYPKQ--SFTMVADTPENLRLKQ
.: :..: : : .. ::: :.:.
XP_005 EQLSAVKYKGELQRGTAISDPPELKRAKENQKNISNVYYRGQLGRATTLSVTPEMERVKK
690 700 710 720 730 740
80 90 100 110 120 130
pF1KB6 QSELQSQVRYKEEFEKNKGKGFSVVADTPELQRIKKTQDQISNIKYHEEFEKSRMGPSGG
..: :.:.: .. .. ::. :.. ::: ....:..:..:: .::::.:::.. :
XP_005 NQENISSVKYTQDHKQMKGRP-SLILDTPAMRHVKEAQNHISMVKYHEDFEKTK-----G
750 760 770 780 790
140 150 160 170 180
pF1KB6 EGMEPE---------RRDSQ--DGSSYR--RP--LEQQQPHHIPTSAPVYQQPQQQPVAQ
.:. : :...: . ..:. .: .:... : ::: :: .:
XP_005 RGFTPVVDDPVTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGI-IVAPVLPGAYQQSHSQ
800 810 820 830 840 850
190 200 210 220 230 240
pF1KB6 SYGGYKEPAAPVSIQRSAPGGGGKR-YRAVYDYSAADEDEVSFQDGDTIVNVQQIDDGWM
.:: ... . :: .:: . . : :::.::::: :::::::.::: ::::: ::::::
XP_005 GYGYMHQTS--VSSMRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWM
860 870 880 890 900 910
250 260
pF1KB6 YGTVERTGDTGMLPANYVEAI
::::.::: ::::::::.: .
XP_005 YGTVQRTGRTGMLPANYIEFVN
920 930
>>XP_005252399 (OMIM: 605491) PREDICTED: nebulette isofo (980 aa)
initn: 663 init1: 321 opt: 367 Z-score: 227.0 bits: 51.6 E(85289): 6.6e-06
Smith-Waterman score: 425; 35.1% identity (55.8% similar) in 276 aa overlap (42-261:706-979)
20 30 40 50 60 70
pF1KB6 VYPTEKVNCLDKFWHKACFHCETCKMTLNMKNYKGYEKKPYCNAHYP-KQSFTMVADTPE
:: .. . : . : : ... :::
XP_005 NQKNISNVYYRGQLGRATTLSVTPEMERVKKNQENISSVKYTQDHKQMKGRPSLILDTPA
680 690 700 710 720 730
80 90 100 110 120
pF1KB6 NLRLKQQSELQSQVRYKEEFEKNKGKGFSVVADTPELQRIKKTQDQISNIKY---HE---
..:. .. :.:.:.:.:::.::.::. :.: : .:..:. . .:. : :
XP_005 MRHVKEAQNHISMVKYHEDFEKTKGRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHPHIV
740 750 760 770 780 790
130 140 150 160
pF1KB6 EFEKS----------RMGPSGGEGMEP-----ERRD----SQDGSSYRRPLEQQQPHHI-
:... : :.. ..: . :. :. .: ::: ...
XP_005 EMDRRPGIIVDLKVWRTDPGSIFDLDPLEDNIQSRSLHMLSEKASHYRRHWSRSHSSSTF
800 810 820 830 840 850
170 180 190
pF1KB6 --------------------------PTS--APVYQQPQQQPVAQSYGGYKEPAAPVSIQ
:.. ::: :: .:.:: ... . :: .
XP_005 GTGLGDDRSEISEIYPSFSCCSEVTRPSDEGAPVLPGAYQQSHSQGYGYMHQTS--VSSM
860 870 880 890 900 910
200 210 220 230 240 250
pF1KB6 RSAPGGGGKR-YRAVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPA
:: . . : :::.::::: :::::::.::: ::::: ::::::::::.::: ::::::
XP_005 RSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPA
920 930 940 950 960 970
260
pF1KB6 NYVEAI
::.: .
XP_005 NYIEFVN
980
>>XP_016870957 (OMIM: 605491) PREDICTED: nebulette isofo (998 aa)
initn: 663 init1: 321 opt: 367 Z-score: 227.0 bits: 51.6 E(85289): 6.7e-06
Smith-Waterman score: 425; 35.1% identity (55.8% similar) in 276 aa overlap (42-261:724-997)
20 30 40 50 60 70
pF1KB6 VYPTEKVNCLDKFWHKACFHCETCKMTLNMKNYKGYEKKPYCNAHYP-KQSFTMVADTPE
:: .. . : . : : ... :::
XP_016 NQKNISNVYYRGQLGRATTLSVTPEMERVKKNQENISSVKYTQDHKQMKGRPSLILDTPA
700 710 720 730 740 750
80 90 100 110 120
pF1KB6 NLRLKQQSELQSQVRYKEEFEKNKGKGFSVVADTPELQRIKKTQDQISNIKY---HE---
..:. .. :.:.:.:.:::.::.::. :.: : .:..:. . .:. : :
XP_016 MRHVKEAQNHISMVKYHEDFEKTKGRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHPHIV
760 770 780 790 800 810
130 140 150 160
pF1KB6 EFEKS----------RMGPSGGEGMEP-----ERRD----SQDGSSYRRPLEQQQPHHI-
:... : :.. ..: . :. :. .: ::: ...
XP_016 EMDRRPGIIVDLKVWRTDPGSIFDLDPLEDNIQSRSLHMLSEKASHYRRHWSRSHSSSTF
820 830 840 850 860 870
170 180 190
pF1KB6 --------------------------PTS--APVYQQPQQQPVAQSYGGYKEPAAPVSIQ
:.. ::: :: .:.:: ... . :: .
XP_016 GTGLGDDRSEISEIYPSFSCCSEVTRPSDEGAPVLPGAYQQSHSQGYGYMHQTS--VSSM
880 890 900 910 920 930
200 210 220 230 240 250
pF1KB6 RSAPGGGGKR-YRAVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPA
:: . . : :::.::::: :::::::.::: ::::: ::::::::::.::: ::::::
XP_016 RSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPA
940 950 960 970 980 990
260
pF1KB6 NYVEAI
::.: .
XP_016 NYIEFVN
>>XP_011517593 (OMIM: 605491) PREDICTED: nebulette isofo (998 aa)
initn: 663 init1: 321 opt: 367 Z-score: 227.0 bits: 51.6 E(85289): 6.7e-06
Smith-Waterman score: 425; 35.1% identity (55.8% similar) in 276 aa overlap (42-261:724-997)
20 30 40 50 60 70
pF1KB6 VYPTEKVNCLDKFWHKACFHCETCKMTLNMKNYKGYEKKPYCNAHYP-KQSFTMVADTPE
:: .. . : . : : ... :::
XP_011 NQKNISNVYYRGQLGRATTLSVTPEMERVKKNQENISSVKYTQDHKQMKGRPSLILDTPA
700 710 720 730 740 750
80 90 100 110 120
pF1KB6 NLRLKQQSELQSQVRYKEEFEKNKGKGFSVVADTPELQRIKKTQDQISNIKY---HE---
..:. .. :.:.:.:.:::.::.::. :.: : .:..:. . .:. : :
XP_011 MRHVKEAQNHISMVKYHEDFEKTKGRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHPHIV
760 770 780 790 800 810
130 140 150 160
pF1KB6 EFEKS----------RMGPSGGEGMEP-----ERRD----SQDGSSYRRPLEQQQPHHI-
:... : :.. ..: . :. :. .: ::: ...
XP_011 EMDRRPGIIVDLKVWRTDPGSIFDLDPLEDNIQSRSLHMLSEKASHYRRHWSRSHSSSTF
820 830 840 850 860 870
170 180 190
pF1KB6 --------------------------PTS--APVYQQPQQQPVAQSYGGYKEPAAPVSIQ
:.. ::: :: .:.:: ... . :: .
XP_011 GTGLGDDRSEISEIYPSFSCCSEVTRPSDEGAPVLPGAYQQSHSQGYGYMHQTS--VSSM
880 890 900 910 920 930
200 210 220 230 240 250
pF1KB6 RSAPGGGGKR-YRAVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPA
:: . . : :::.::::: :::::::.::: ::::: ::::::::::.::: ::::::
XP_011 RSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPA
940 950 960 970 980 990
260
pF1KB6 NYVEAI
::.: .
XP_011 NYIEFVN
>>XP_016870956 (OMIM: 605491) PREDICTED: nebulette isofo (998 aa)
initn: 663 init1: 321 opt: 367 Z-score: 227.0 bits: 51.6 E(85289): 6.7e-06
Smith-Waterman score: 425; 35.1% identity (55.8% similar) in 276 aa overlap (42-261:724-997)
20 30 40 50 60 70
pF1KB6 VYPTEKVNCLDKFWHKACFHCETCKMTLNMKNYKGYEKKPYCNAHYP-KQSFTMVADTPE
:: .. . : . : : ... :::
XP_016 NQKNISNVYYRGQLGRATTLSVTPEMERVKKNQENISSVKYTQDHKQMKGRPSLILDTPA
700 710 720 730 740 750
80 90 100 110 120
pF1KB6 NLRLKQQSELQSQVRYKEEFEKNKGKGFSVVADTPELQRIKKTQDQISNIKY---HE---
..:. .. :.:.:.:.:::.::.::. :.: : .:..:. . .:. : :
XP_016 MRHVKEAQNHISMVKYHEDFEKTKGRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHPHIV
760 770 780 790 800 810
130 140 150 160
pF1KB6 EFEKS----------RMGPSGGEGMEP-----ERRD----SQDGSSYRRPLEQQQPHHI-
:... : :.. ..: . :. :. .: ::: ...
XP_016 EMDRRPGIIVDLKVWRTDPGSIFDLDPLEDNIQSRSLHMLSEKASHYRRHWSRSHSSSTF
820 830 840 850 860 870
170 180 190
pF1KB6 --------------------------PTS--APVYQQPQQQPVAQSYGGYKEPAAPVSIQ
:.. ::: :: .:.:: ... . :: .
XP_016 GTGLGDDRSEISEIYPSFSCCSEVTRPSDEGAPVLPGAYQQSHSQGYGYMHQTS--VSSM
880 890 900 910 920 930
200 210 220 230 240 250
pF1KB6 RSAPGGGGKR-YRAVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPA
:: . . : :::.::::: :::::::.::: ::::: ::::::::::.::: ::::::
XP_016 RSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPA
940 950 960 970 980 990
260
pF1KB6 NYVEAI
::.: .
XP_016 NYIEFVN
>>NP_006384 (OMIM: 605491) nebulette isoform 1 [Homo sap (1014 aa)
initn: 663 init1: 321 opt: 367 Z-score: 226.9 bits: 51.6 E(85289): 6.7e-06
Smith-Waterman score: 425; 35.1% identity (55.8% similar) in 276 aa overlap (42-261:740-1013)
20 30 40 50 60 70
pF1KB6 VYPTEKVNCLDKFWHKACFHCETCKMTLNMKNYKGYEKKPYCNAHYP-KQSFTMVADTPE
:: .. . : . : : ... :::
NP_006 NQKNISNVYYRGQLGRATTLSVTPEMERVKKNQENISSVKYTQDHKQMKGRPSLILDTPA
710 720 730 740 750 760
80 90 100 110 120
pF1KB6 NLRLKQQSELQSQVRYKEEFEKNKGKGFSVVADTPELQRIKKTQDQISNIKY---HE---
..:. .. :.:.:.:.:::.::.::. :.: : .:..:. . .:. : :
NP_006 MRHVKEAQNHISMVKYHEDFEKTKGRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHPHIV
770 780 790 800 810 820
130 140 150 160
pF1KB6 EFEKS----------RMGPSGGEGMEP-----ERRD----SQDGSSYRRPLEQQQPHHI-
:... : :.. ..: . :. :. .: ::: ...
NP_006 EMDRRPGIIVDLKVWRTDPGSIFDLDPLEDNIQSRSLHMLSEKASHYRRHWSRSHSSSTF
830 840 850 860 870 880
170 180 190
pF1KB6 --------------------------PTS--APVYQQPQQQPVAQSYGGYKEPAAPVSIQ
:.. ::: :: .:.:: ... . :: .
NP_006 GTGLGDDRSEISEIYPSFSCCSEVTRPSDEGAPVLPGAYQQSHSQGYGYMHQTS--VSSM
890 900 910 920 930 940
200 210 220 230 240 250
pF1KB6 RSAPGGGGKR-YRAVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPA
:: . . : :::.::::: :::::::.::: ::::: ::::::::::.::: ::::::
NP_006 RSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPA
950 960 970 980 990 1000
260
pF1KB6 NYVEAI
::.: .
NP_006 NYIEFVN
1010
261 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 20:30:50 2016 done: Fri Nov 4 20:30:51 2016
Total Scan time: 7.350 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]