FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6328, 231 aa
  1>>>pF1KB6328 231 - 231 aa - 231 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6395+/-0.000632; mu= 9.5456+/- 0.038
 mean_var=116.2791+/-23.238, 0's: 0 Z-trim(115.9): 2  B-trim: 0 in 0/52
 Lambda= 0.118939
 statistics sampled from 16441 (16443) to 16441 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.827), E-opt: 0.2 (0.505), width:  16
 Scan time:  1.900

The best scores are:                                      opt bits E(32554)
CCDS44230.1 HAX1 gene_id:10456|Hs108|chr1          ( 231) 1643 291.6 2.9e-79
CCDS1064.1 HAX1 gene_id:10456|Hs108|chr1           ( 279) 1521 270.7 6.7e-73


>>CCDS44230.1 HAX1 gene_id:10456|Hs108|chr1               (231 aa)
 initn: 1643 init1: 1643 opt: 1643  Z-score: 1536.6  bits: 291.6 E(32554): 2.9e-79
Smith-Waterman score: 1643; 100.0% identity (100.0% similar) in 231 aa overlap (1-231:1-231)

               10        20        30        40        50        60
pF1KB6 MSLFDLFRGFFGFPGPRSFSPGGGIRFHDNFGFDDLVRDFNSIFSDMGAWTLPSHPPELP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MSLFDLFRGFFGFPGPRSFSPGGGIRFHDNFGFDDLVRDFNSIFSDMGAWTLPSHPPELP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GPESETPGERLREGQTLRDSMLKYPDSHQPRIFGGVLESDARSESPQPAPDWGSQRPFHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GPESETPGERLREGQTLRDSMLKYPDSHQPRIFGGVLESDARSESPQPAPDWGSQRPFHR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 FDDVWPMDPHPRTREDNDLDSQVSQEGLGPVLQPQPKSYFKSISVTKITKPDGIVEERRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 FDDVWPMDPHPRTREDNDLDSQVSQEGLGPVLQPQPKSYFKSISVTKITKPDGIVEERRT
              130       140       150       160       170       180

              190       200       210       220       230 
pF1KB6 VVDSEGRTETTVTRHEADSSPRGDPESPRPPALDDAFSILDLFLGRWFRSR
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VVDSEGRTETTVTRHEADSSPRGDPESPRPPALDDAFSILDLFLGRWFRSR
              190       200       210       220       230 

>>CCDS1064.1 HAX1 gene_id:10456|Hs108|chr1                (279 aa)
 initn: 1515 init1: 1515 opt: 1521  Z-score: 1422.3  bits: 270.7 E(32554): 6.7e-73
Smith-Waterman score: 1521; 98.2% identity (98.2% similar) in 221 aa overlap (11-231:63-279)

                                   10        20        30        40
pF1KB6                     MSLFDLFRGFFGFPGPRSFSPGGGIRFHDNFGFDDLVRDF
                                     :::    :::::::::::::::::::::::
CCDS10 DDEEEEEEGGSWGRGNPRFHSPQHPPEEFGFGF----SFSPGGGIRFHDNFGFDDLVRDF
             40        50        60            70        80        

               50        60        70        80        90       100
pF1KB6 NSIFSDMGAWTLPSHPPELPGPESETPGERLREGQTLRDSMLKYPDSHQPRIFGGVLESD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NSIFSDMGAWTLPSHPPELPGPESETPGERLREGQTLRDSMLKYPDSHQPRIFGGVLESD
       90       100       110       120       130       140        

              110       120       130       140       150       160
pF1KB6 ARSESPQPAPDWGSQRPFHRFDDVWPMDPHPRTREDNDLDSQVSQEGLGPVLQPQPKSYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ARSESPQPAPDWGSQRPFHRFDDVWPMDPHPRTREDNDLDSQVSQEGLGPVLQPQPKSYF
      150       160       170       180       190       200        

              170       180       190       200       210       220
pF1KB6 KSISVTKITKPDGIVEERRTVVDSEGRTETTVTRHEADSSPRGDPESPRPPALDDAFSIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KSISVTKITKPDGIVEERRTVVDSEGRTETTVTRHEADSSPRGDPESPRPPALDDAFSIL
      210       220       230       240       250       260        

              230 
pF1KB6 DLFLGRWFRSR
       :::::::::::
CCDS10 DLFLGRWFRSR
      270         




231 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:32:13 2016 done: Sat Nov  5 00:32:13 2016
 Total Scan time:  1.900 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]