FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6328, 231 aa
  1>>>pF1KB6328 231 - 231 aa - 231 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8020+/-0.000266; mu= 8.6288+/- 0.017
 mean_var=120.9232+/-24.014, 0's: 0 Z-trim(123.4): 2  B-trim: 33 in 1/56
 Lambda= 0.116632
 statistics sampled from 43025 (43027) to 43025 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.828), E-opt: 0.2 (0.504), width:  16
 Scan time:  7.270

The best scores are:                                      opt bits E(85289)
NP_001018238 (OMIM: 605998,610738) HCLS1-associate ( 231) 1643 286.3   3e-77
NP_006109 (OMIM: 605998,610738) HCLS1-associated p ( 279) 1521 265.8 5.2e-71


>>NP_001018238 (OMIM: 605998,610738) HCLS1-associated pr  (231 aa)
 initn: 1643 init1: 1643 opt: 1643  Z-score: 1507.9  bits: 286.3 E(85289): 3e-77
Smith-Waterman score: 1643; 100.0% identity (100.0% similar) in 231 aa overlap (1-231:1-231)

               10        20        30        40        50        60
pF1KB6 MSLFDLFRGFFGFPGPRSFSPGGGIRFHDNFGFDDLVRDFNSIFSDMGAWTLPSHPPELP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLFDLFRGFFGFPGPRSFSPGGGIRFHDNFGFDDLVRDFNSIFSDMGAWTLPSHPPELP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GPESETPGERLREGQTLRDSMLKYPDSHQPRIFGGVLESDARSESPQPAPDWGSQRPFHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPESETPGERLREGQTLRDSMLKYPDSHQPRIFGGVLESDARSESPQPAPDWGSQRPFHR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 FDDVWPMDPHPRTREDNDLDSQVSQEGLGPVLQPQPKSYFKSISVTKITKPDGIVEERRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FDDVWPMDPHPRTREDNDLDSQVSQEGLGPVLQPQPKSYFKSISVTKITKPDGIVEERRT
              130       140       150       160       170       180

              190       200       210       220       230 
pF1KB6 VVDSEGRTETTVTRHEADSSPRGDPESPRPPALDDAFSILDLFLGRWFRSR
       :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVDSEGRTETTVTRHEADSSPRGDPESPRPPALDDAFSILDLFLGRWFRSR
              190       200       210       220       230 

>>NP_006109 (OMIM: 605998,610738) HCLS1-associated prote  (279 aa)
 initn: 1515 init1: 1515 opt: 1521  Z-score: 1395.8  bits: 265.8 E(85289): 5.2e-71
Smith-Waterman score: 1521; 98.2% identity (98.2% similar) in 221 aa overlap (11-231:63-279)

                                   10        20        30        40
pF1KB6                     MSLFDLFRGFFGFPGPRSFSPGGGIRFHDNFGFDDLVRDF
                                     :::    :::::::::::::::::::::::
NP_006 DDEEEEEEGGSWGRGNPRFHSPQHPPEEFGFGF----SFSPGGGIRFHDNFGFDDLVRDF
             40        50        60            70        80        

               50        60        70        80        90       100
pF1KB6 NSIFSDMGAWTLPSHPPELPGPESETPGERLREGQTLRDSMLKYPDSHQPRIFGGVLESD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 NSIFSDMGAWTLPSHPPELPGPESETPGERLREGQTLRDSMLKYPDSHQPRIFGGVLESD
       90       100       110       120       130       140        

              110       120       130       140       150       160
pF1KB6 ARSESPQPAPDWGSQRPFHRFDDVWPMDPHPRTREDNDLDSQVSQEGLGPVLQPQPKSYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 ARSESPQPAPDWGSQRPFHRFDDVWPMDPHPRTREDNDLDSQVSQEGLGPVLQPQPKSYF
      150       160       170       180       190       200        

              170       180       190       200       210       220
pF1KB6 KSISVTKITKPDGIVEERRTVVDSEGRTETTVTRHEADSSPRGDPESPRPPALDDAFSIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 KSISVTKITKPDGIVEERRTVVDSEGRTETTVTRHEADSSPRGDPESPRPPALDDAFSIL
      210       220       230       240       250       260        

              230 
pF1KB6 DLFLGRWFRSR
       :::::::::::
NP_006 DLFLGRWFRSR
      270         




231 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:32:13 2016 done: Sat Nov  5 00:32:14 2016
 Total Scan time:  7.270 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]