Result of FASTA (ccds) for
pF1KB6329
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6329, 261 aa
1>>>pF1KB6329 261 - 261 aa - 261 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0222+/-0.000699; mu= 16.3821+/- 0.042
mean_var=60.5207+/-12.229, 0's: 0 Z-trim(108.7): 14 B-trim: 6 in 1/47
Lambda= 0.164863
statistics sampled from 10384 (10396) to 10384 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.319), width: 16
Scan time: 2.050
The best scores are: opt bits E(32554)
CCDS2416.1 CTDSP1 gene_id:58190|Hs108|chr2 ( 261) 1765 427.8 3.7e-120
CCDS56166.1 CTDSP1 gene_id:58190|Hs108|chr2 ( 260) 1630 395.7 1.7e-110
CCDS33735.1 CTDSPL gene_id:10217|Hs108|chr3 ( 265) 1203 294.1 6.5e-80
CCDS33734.1 CTDSPL gene_id:10217|Hs108|chr3 ( 276) 1048 257.3 8.4e-69
CCDS41801.1 CTDSP2 gene_id:10106|Hs108|chr12 ( 271) 981 241.3 5.2e-64
CCDS10110.1 CTDSPL2 gene_id:51496|Hs108|chr15 ( 466) 508 129.0 6e-30
CCDS11093.1 CTDNEP1 gene_id:23399|Hs108|chr17 ( 244) 432 110.7 9.7e-25
CCDS33023.1 TIMM50 gene_id:92609|Hs108|chr19 ( 456) 268 71.9 9e-13
>>CCDS2416.1 CTDSP1 gene_id:58190|Hs108|chr2 (261 aa)
initn: 1765 init1: 1765 opt: 1765 Z-score: 2270.7 bits: 427.8 E(32554): 3.7e-120
Smith-Waterman score: 1765; 100.0% identity (100.0% similar) in 261 aa overlap (1-261:1-261)
10 20 30 40 50 60
pF1KB6 MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 PLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 DGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 DGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRES
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 CVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 CVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPF
190 200 210 220 230 240
250 260
pF1KB6 FEQLSRVDDVYSVLRQPRPGS
:::::::::::::::::::::
CCDS24 FEQLSRVDDVYSVLRQPRPGS
250 260
>>CCDS56166.1 CTDSP1 gene_id:58190|Hs108|chr2 (260 aa)
initn: 1275 init1: 1275 opt: 1630 Z-score: 2097.2 bits: 395.7 E(32554): 1.7e-110
Smith-Waterman score: 1630; 96.8% identity (98.0% similar) in 251 aa overlap (12-261:11-260)
10 20 30 40 50
pF1KB6 MDSSAVITQISKEEARGPLRG-KGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSG
.::.:: : .:::::::::::::::::::::::::::::::::::::
CCDS56 MVAAPWATQEQEEGRGIQPGDRGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSG
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 APLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVE
::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 APLLVEENGAIPK-TPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 IDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 IDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 SCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLP
180 190 200 210 220 230
240 250 260
pF1KB6 FFEQLSRVDDVYSVLRQPRPGS
::::::::::::::::::::::
CCDS56 FFEQLSRVDDVYSVLRQPRPGS
240 250 260
>>CCDS33735.1 CTDSPL gene_id:10217|Hs108|chr3 (265 aa)
initn: 1185 init1: 1034 opt: 1203 Z-score: 1548.2 bits: 294.1 E(32554): 6.5e-80
Smith-Waterman score: 1203; 70.0% identity (85.6% similar) in 263 aa overlap (1-256:1-261)
10 20 30 40 50
pF1KB6 MDSSAVITQISK-EEARGPLRGKGDQKSAAS---QKPRSRGILHSLFCCVCRD-DGEALP
::. :.:::... .: .: : : :.. : . .: :::.:: :.::: :: . :: :
CCDS33 MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCF-RDYNVEAPP
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 AHSGA--PLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNAD
: . : ::::::.. : :..:::::. . : : :::::::::::::::::..:::
CCDS33 PSSPSVLPPLVEENGGLQKP-PAKYLLPEVTVLDYGKKCVVIDLDETLVHSSFKPISNAD
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 FIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFR
::.::::::..:::::::::::::::::::.:::::::::::::::::::::::.::.::
CCDS33 FIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 ARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTE
::::::::::::::::::::::::.: .:.:.:::::::.:::.::::: ::::.:.:::
CCDS33 ARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTE
180 190 200 210 220 230
240 250 260
pF1KB6 LHDLLPFFEQLSRVDDVYSVLRQPRPGS
: ::.:::: ::: :::::.:..
CCDS33 LLDLIPFFEGLSREDDVYSMLHRLCNR
240 250 260
>>CCDS33734.1 CTDSPL gene_id:10217|Hs108|chr3 (276 aa)
initn: 1185 init1: 1034 opt: 1048 Z-score: 1348.7 bits: 257.3 E(32554): 8.4e-69
Smith-Waterman score: 1185; 67.4% identity (82.8% similar) in 273 aa overlap (1-256:1-272)
10 20 30 40 50
pF1KB6 MDSSAVITQISK-EEARGPLRGKGDQKSAAS---QKPRSRGILHSLFCCVCRD-DGEALP
::. :.:::... .: .: : : :.. : . .: :::.:: :.::: :: . :: :
CCDS33 MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCF-RDYNVEAPP
10 20 30 40 50
60 70 80 90 100
pF1KB6 AHSGA--PLLVEENGAIPK----------QTPVQYLLPEAKAQDSDKICVVIDLDETLVH
: . : ::::::.. : . :..:::::. . : : ::::::::::::
CCDS33 PSSPSVLPPLVEENGGLQKGDQRQVIPIPSPPAKYLLPEVTVLDYGKKCVVIDLDETLVH
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB6 SSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVA
:::::..:::::.::::::..:::::::::::::::::::.:::::::::::::::::::
CCDS33 SSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVA
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB6 DLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVA
::::.::.::::::::::::::::::::::::::.: .:.:.:::::::.:::.:::::
CCDS33 DLLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQ
180 190 200 210 220 230
230 240 250 260
pF1KB6 SWFDNMSDTELHDLLPFFEQLSRVDDVYSVLRQPRPGS
::::.:.:::: ::.:::: ::: :::::.:..
CCDS33 SWFDDMTDTELLDLIPFFEGLSREDDVYSMLHRLCNR
240 250 260 270
>>CCDS41801.1 CTDSP2 gene_id:10106|Hs108|chr12 (271 aa)
initn: 1038 init1: 973 opt: 981 Z-score: 1262.7 bits: 241.3 E(32554): 5.2e-64
Smith-Waterman score: 1049; 60.9% identity (80.1% similar) in 271 aa overlap (1-258:1-269)
10 20 30 40 50
pF1KB6 MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCV-CRDDGEALPAHSG
:. ...::: .:.: : .: .... .:::.:.:...:::: . :.. .
CCDS41 MEHGSIITQARREDAL-VLTKQGLVSKSSPKKPRGRNIFKALFCCFRAQHVGQSSSSTEL
10 20 30 40 50
60 70 80 90 100
pF1KB6 APLLVEENGAIPK------------QTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFK
: :: ..: : : : ::::. .:. .:::::::::::::::::
CCDS41 AAYK-EEANTIAKSDLLQCLQYQFYQIPGTCLLPEVTEEDQGRICVVIDLDETLVHSSFK
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB6 PVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD
:.::::::.:.::.:..:::::::::.:::::.::::::::::::::::::::::.::::
CCDS41 PINNADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLD
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB6 KWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFD
. :.:::::::::::::.: :::::::::::::..::::::::::.:::.::::: ::::
CCDS41 RCGVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSWFD
180 190 200 210 220 230
230 240 250 260
pF1KB6 NMSDTELHDLLPFFEQLSRVDDVYSVLRQPRPGS
.:.:::: .:.:.::.:: ..:::. : : :
CCDS41 DMADTELLNLIPIFEELSGAEDVYTSLGQLRAP
240 250 260 270
>>CCDS10110.1 CTDSPL2 gene_id:51496|Hs108|chr15 (466 aa)
initn: 500 init1: 273 opt: 508 Z-score: 651.2 bits: 129.0 E(32554): 6e-30
Smith-Waterman score: 508; 44.9% identity (75.3% similar) in 178 aa overlap (80-255:278-454)
50 60 70 80 90 100
pF1KB6 DGEALPAHSGAPLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPV
:: :.... .. .:.:::::::: :.. .
CCDS10 YEEDWEVFDPYYFIKHVPPLTEEQLNRKPALP-LKTRSTPEFSLVLDLDETLVHCSLNEL
250 260 270 280 290 300
110 120 130 140 150 160
pF1KB6 NNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD-K
..: . .:: .. :..:::: :: :::.::....: .::::: ::: . ..:: :
CCDS10 EDAALTFPVLFQDVIYQVYVRLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPK
310 320 330 340 350 360
170 180 190 200 210 220
pF1KB6 WGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDN
: ::::: :: .:::.:::. ::::: ...:.:::: ..... .:..:. ::: .
CCDS10 KQLVRHRLFREHCVCVQGNYIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESWFMD
370 380 390 400 410 420
230 240 250 260
pF1KB6 MSDTELHDLLPFFEQLSRVD-DVYSVLRQPRPGS
.:.:: :.::.:.: ... :: .:
CCDS10 KNDNELLKLIPFLEKLVELNEDVRPHIRDRFRLHDLLPPD
430 440 450 460
>>CCDS11093.1 CTDNEP1 gene_id:23399|Hs108|chr17 (244 aa)
initn: 476 init1: 283 opt: 432 Z-score: 557.7 bits: 110.7 E(32554): 9.7e-25
Smith-Waterman score: 474; 45.3% identity (69.8% similar) in 179 aa overlap (85-254:57-234)
60 70 80 90 100
pF1KB6 PAHSGAPLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHS--------SF
:: . :: .:.::::::.:: .
CCDS11 LLRRQIRTVIQYQTVRYDILPLSPVSRNRLAQVKRKI-LVLDLDETLIHSHHDGVLRPTV
30 40 50 60 70 80
110 120 130 140 150 160
pF1KB6 KPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLL
.: . :::. : :: . .: :::::: ::. ... .: :.::::. :.. ::: :
CCDS11 RPGTPPDFILKVVIDKHPVRFFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKL
90 100 110 120 130 140
170 180 190 200 210 220
pF1KB6 DK-WGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASW
:. . .. : .:. :... :.:.:::: . :: ..::::::..: :::::.:. ::
CCDS11 DNSRSILKRRYYRQHCTLELGSYIKDLSVVHSDLSSIVILDNSPGAYRSHPDNAIPIKSW
150 160 170 180 190 200
230 240 250 260
pF1KB6 FDNMSDTELHDLLPFFEQLSRVDDVYSVLRQPRPGS
:.. ::: : .:::... : . :: :::
CCDS11 FSDPSDTALLNLLPMLDALRFTADVRSVLSRNLHQHRLW
210 220 230 240
>>CCDS33023.1 TIMM50 gene_id:92609|Hs108|chr19 (456 aa)
initn: 295 init1: 245 opt: 268 Z-score: 342.8 bits: 71.9 E(32554): 9e-13
Smith-Waterman score: 288; 27.2% identity (55.1% similar) in 265 aa overlap (9-256:139-403)
10 20 30
pF1KB6 MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGI
: .. .:: ...: :.. .:. :
CCDS33 AVFSRLRSGLRLGSRGLCTRLATPPRRAPDQAAEIGSRGSTKAQGPQQQPGSEGPSYAKK
110 120 130 140 150 160
40 50 60 70 80 90
pF1KB6 LHSLFCCVCRDDGEALPAHSGAPLLVEENGA-IPKQ---TP--VQYLLPEAKAQDSDKIC
. . . : . .. . :.:::: :: . : :: : : . .
CCDS33 VALWLAGLLGAGGTVSVVYIFGNNPVDENGAKIPDEFDNDPILVQQLRRTYKYFKDYRQM
170 180 190 200 210 220
100 110 120 130 140
pF1KB6 VVIDLDETLVHSSFK-PVNNADFIIPVEIDGVV-HQVYVL-------KRPHVDEFLQRMG
.. . :. . .. : . . . .:. ::. : . : ::: .. ..:...
CCDS33 IIEPTSPCLLPDPLQEPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGIETLFQQLA
230 240 250 260 270 280
150 160 170 180 190 200
pF1KB6 ELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVL
:.: :.::. . : :. : .: : . ::::.. . :..:::.: :.:: ::.
CCDS33 PLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPARVV
290 300 310 320 330 340
210 220 230 240 250 260
pF1KB6 ILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQ--LSRVDDVYSVLRQPRPGS
..: . .. ..: :.: . : : .: : :: :.. :. :.:: .::..
CCDS33 VVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVLEHYALED
350 360 370 380 390 400
CCDS33 DPLAAFKQRQSRLEQEEQQRLAELSKSNKQNLFLGSLTSRLWPRSKQP
410 420 430 440 450
261 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 00:30:10 2016 done: Sat Nov 5 00:30:10 2016
Total Scan time: 2.050 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]