Result of FASTA (omim) for
pF1KB6338
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6338, 290 aa
1>>>pF1KB6338 290 - 290 aa - 290 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7925+/-0.000392; mu= 12.4982+/- 0.024
mean_var=93.9155+/-19.301, 0's: 0 Z-trim(113.7): 131 B-trim: 292 in 1/54
Lambda= 0.132344
statistics sampled from 23031 (23196) to 23031 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.272), width: 16
Scan time: 7.390
The best scores are: opt bits E(85289)
NP_000560 (OMIM: 146740,615707) low affinity immun ( 359) 1971 386.8 3.2e-107
NP_001121064 (OMIM: 146740,615707) low affinity im ( 358) 1953 383.4 3.5e-106
NP_001231682 (OMIM: 610665) low affinity immunoglo ( 269) 1759 346.2 3.9e-95
NP_001257964 (OMIM: 610665) low affinity immunoglo ( 268) 1741 342.8 4.2e-94
NP_001121067 (OMIM: 146740,615707) low affinity im ( 254) 1724 339.5 3.9e-93
NP_001121065 (OMIM: 146740,615707) low affinity im ( 254) 1724 339.5 3.9e-93
NP_001316049 (OMIM: 146740,615707) low affinity im ( 254) 1724 339.5 3.9e-93
NP_001121068 (OMIM: 146740,615707) low affinity im ( 253) 1706 336.1 4.2e-92
NP_000561 (OMIM: 610665) low affinity immunoglobul ( 233) 1523 301.1 1.3e-81
NP_001257965 (OMIM: 610665) low affinity immunoglo ( 216) 1416 280.7 1.7e-75
NP_001316051 (OMIM: 146740,615707) low affinity im ( 273) 957 193.1 5e-49
XP_016856156 (OMIM: 146790,152700,611162) PREDICTE ( 276) 644 133.4 4.9e-31
XP_016856155 (OMIM: 146790,152700,611162) PREDICTE ( 328) 644 133.4 5.6e-31
NP_001129691 (OMIM: 146790,152700,611162) low affi ( 317) 638 132.3 1.2e-30
XP_011507592 (OMIM: 146790,152700,611162) PREDICTE ( 317) 638 132.3 1.2e-30
XP_016856157 (OMIM: 146790,152700,611162) PREDICTE ( 275) 637 132.0 1.2e-30
XP_016856153 (OMIM: 146790,152700,611162) PREDICTE ( 353) 638 132.3 1.3e-30
XP_016856154 (OMIM: 146790,152700,611162) PREDICTE ( 353) 638 132.3 1.3e-30
XP_011507589 (OMIM: 146790,152700,611162) PREDICTE ( 369) 638 132.3 1.4e-30
XP_011507593 (OMIM: 146790,152700,611162) PREDICTE ( 261) 630 130.7 3e-30
NP_067674 (OMIM: 146790,152700,611162) low affinit ( 316) 631 130.9 3e-30
XP_016856152 (OMIM: 146790,152700,611162) PREDICTE ( 368) 631 131.0 3.4e-30
XP_016856150 (OMIM: 601502) PREDICTED: high affini ( 281) 608 126.5 5.8e-29
NP_001017986 (OMIM: 601502) high affinity immunogl ( 280) 600 125.0 1.7e-28
XP_011507594 (OMIM: 152700,604590,611162) PREDICTE ( 234) 596 124.1 2.5e-28
NP_001002274 (OMIM: 152700,604590,611162) low affi ( 291) 593 123.6 4.3e-28
XP_016856161 (OMIM: 152700,604590,611162) PREDICTE ( 291) 593 123.6 4.3e-28
NP_003992 (OMIM: 152700,604590,611162) low affinit ( 310) 593 123.7 4.6e-28
XP_016856160 (OMIM: 152700,604590,611162) PREDICTE ( 310) 593 123.7 4.6e-28
XP_016856158 (OMIM: 152700,604590,611162) PREDICTE ( 324) 593 123.7 4.7e-28
NP_001002273 (OMIM: 152700,604590,611162) low affi ( 290) 590 123.1 6.5e-28
NP_001257966 (OMIM: 610665) low affinity immunoglo ( 130) 585 121.8 6.8e-28
NP_001002275 (OMIM: 152700,604590,611162) low affi ( 309) 590 123.1 6.8e-28
XP_016856159 (OMIM: 152700,604590,611162) PREDICTE ( 323) 590 123.1 7e-28
XP_005245014 (OMIM: 146760) PREDICTED: high affini ( 375) 587 122.6 1.2e-27
NP_963857 (OMIM: 188030,612169) low affinity immun ( 323) 585 122.1 1.4e-27
NP_001177757 (OMIM: 152700,604590,611162) low affi ( 303) 582 121.6 1.9e-27
NP_000557 (OMIM: 146760) high affinity immunoglobu ( 374) 578 120.9 3.8e-27
NP_001231839 (OMIM: 601502) high affinity immunogl ( 224) 556 116.5 4.8e-26
NP_001992 (OMIM: 147140) high affinity immunoglobu ( 257) 548 115.0 1.5e-25
NP_001275760 (OMIM: 609251) Fc receptor-like B iso ( 275) 394 85.6 1.1e-16
XP_011508335 (OMIM: 605877) PREDICTED: Fc receptor ( 844) 400 87.1 1.2e-16
XP_011508334 (OMIM: 605877) PREDICTED: Fc receptor ( 884) 400 87.2 1.3e-16
XP_011508333 (OMIM: 605877) PREDICTED: Fc receptor ( 884) 400 87.2 1.3e-16
NP_112571 (OMIM: 605877) Fc receptor-like protein ( 977) 400 87.2 1.4e-16
NP_001182317 (OMIM: 605877) Fc receptor-like prote ( 998) 400 87.2 1.4e-16
NP_001275758 (OMIM: 609251) Fc receptor-like B iso ( 318) 393 85.5 1.5e-16
NP_001307170 (OMIM: 609251) Fc receptor-like B iso ( 426) 394 85.8 1.6e-16
NP_001002901 (OMIM: 609251) Fc receptor-like B iso ( 426) 394 85.8 1.6e-16
NP_001275761 (OMIM: 609251) Fc receptor-like B iso ( 268) 361 79.3 8.8e-15
>>NP_000560 (OMIM: 146740,615707) low affinity immunoglo (359 aa)
initn: 1971 init1: 1971 opt: 1971 Z-score: 2045.9 bits: 386.8 E(85289): 3.2e-107
Smith-Waterman score: 1971; 99.7% identity (99.7% similar) in 290 aa overlap (1-290:70-359)
10 20 30
pF1KB6 MGGGAGERLFTSSCLVGLVPLGLRISLVTC
::::::::::::::::::::::::::::::
NP_000 GPVLWWGSLARLQTEKSDEVSRKGNWWVTEMGGGAGERLFTSSCLVGLVPLGLRISLVTC
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB6 PLQCGIMWQLLLPTALLLLVSAGMRTEDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PLQCGIMWQLLLPTALLLLVSAGMRTEDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPE
100 110 120 130 140 150
100 110 120 130 140 150
pF1KB6 DNSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 DNSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAP
160 170 180 190 200 210
160 170 180 190 200 210
pF1KB6 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRG
220 230 240 250 260 270
220 230 240 250 260 270
pF1KB6 LVGSKNVSSETVNITITQGLAVSTISSFFPPGYQVSFCLVMVLLFAVDTGLYFSVKTNIR
: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LFGSKNVSSETVNITITQGLAVSTISSFFPPGYQVSFCLVMVLLFAVDTGLYFSVKTNIR
280 290 300 310 320 330
280 290
pF1KB6 SSTRDWKDHKFKWRKDPQDK
::::::::::::::::::::
NP_000 SSTRDWKDHKFKWRKDPQDK
340 350
>>NP_001121064 (OMIM: 146740,615707) low affinity immuno (358 aa)
initn: 1603 init1: 1603 opt: 1953 Z-score: 2027.4 bits: 383.4 E(85289): 3.5e-106
Smith-Waterman score: 1953; 99.3% identity (99.3% similar) in 290 aa overlap (1-290:70-358)
10 20 30
pF1KB6 MGGGAGERLFTSSCLVGLVPLGLRISLVTC
::::::::::::::::::::::::::::::
NP_001 GPVLWWGSLARLQTEKSDEVSRKGNWWVTEMGGGAGERLFTSSCLVGLVPLGLRISLVTC
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB6 PLQCGIMWQLLLPTALLLLVSAGMRTEDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPE
:::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
NP_001 PLQCGIMWQLLLPTALLLLVSAGMRT-DLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPE
100 110 120 130 140 150
100 110 120 130 140 150
pF1KB6 DNSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DNSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAP
160 170 180 190 200 210
160 170 180 190 200 210
pF1KB6 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRG
220 230 240 250 260 270
220 230 240 250 260 270
pF1KB6 LVGSKNVSSETVNITITQGLAVSTISSFFPPGYQVSFCLVMVLLFAVDTGLYFSVKTNIR
: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFGSKNVSSETVNITITQGLAVSTISSFFPPGYQVSFCLVMVLLFAVDTGLYFSVKTNIR
280 290 300 310 320 330
280 290
pF1KB6 SSTRDWKDHKFKWRKDPQDK
::::::::::::::::::::
NP_001 SSTRDWKDHKFKWRKDPQDK
340 350
>>NP_001231682 (OMIM: 610665) low affinity immunoglobuli (269 aa)
initn: 1759 init1: 1759 opt: 1759 Z-score: 1828.9 bits: 346.2 E(85289): 3.9e-95
Smith-Waterman score: 1759; 97.0% identity (98.5% similar) in 269 aa overlap (1-269:1-269)
10 20 30 40 50 60
pF1KB6 MGGGAGERLFTSSCLVGLVPLGLRISLVTCPLQCGIMWQLLLPTALLLLVSAGMRTEDLP
::::.:::::: ::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGGGTGERLFTPSCLVGLVPLGLRISLVTCPLQCGIMWQLLLPTALLLLVSAGMRTEDLP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 KAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVDDS
::::::::::: ::::::::::::::::::::::::::::.::::::::::::::::.::
NP_001 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNENLISSQASSYFIDAATVNDS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 GEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 GKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQGLAVSTISSFFP
:: ::::::::::.:::::::::::::::::::::::::::::::::::::::::::: :
NP_001 GKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQGLAVSTISSFSP
190 200 210 220 230 240
250 260 270 280 290
pF1KB6 PGYQVSFCLVMVLLFAVDTGLYFSVKTNIRSSTRDWKDHKFKWRKDPQDK
:::::::::::::::::::::::::::::
NP_001 PGYQVSFCLVMVLLFAVDTGLYFSVKTNI
250 260
>>NP_001257964 (OMIM: 610665) low affinity immunoglobuli (268 aa)
initn: 1402 init1: 1402 opt: 1741 Z-score: 1810.3 bits: 342.8 E(85289): 4.2e-94
Smith-Waterman score: 1741; 96.7% identity (98.1% similar) in 269 aa overlap (1-269:1-268)
10 20 30 40 50 60
pF1KB6 MGGGAGERLFTSSCLVGLVPLGLRISLVTCPLQCGIMWQLLLPTALLLLVSAGMRTEDLP
::::.:::::: :::::::::::::::::::::::::::::::::::::::::::: :::
NP_001 MGGGTGERLFTPSCLVGLVPLGLRISLVTCPLQCGIMWQLLLPTALLLLVSAGMRT-DLP
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 KAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVDDS
::::::::::: ::::::::::::::::::::::::::::.::::::::::::::::.::
NP_001 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNENLISSQASSYFIDAATVNDS
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 GEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQN
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 GKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQGLAVSTISSFFP
:: ::::::::::.:::::::::::::::::::::::::::::::::::::::::::: :
NP_001 GKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQGLAVSTISSFSP
180 190 200 210 220 230
250 260 270 280 290
pF1KB6 PGYQVSFCLVMVLLFAVDTGLYFSVKTNIRSSTRDWKDHKFKWRKDPQDK
:::::::::::::::::::::::::::::
NP_001 PGYQVSFCLVMVLLFAVDTGLYFSVKTNI
240 250 260
>>NP_001121067 (OMIM: 146740,615707) low affinity immuno (254 aa)
initn: 1724 init1: 1724 opt: 1724 Z-score: 1793.1 bits: 339.5 E(85289): 3.9e-93
Smith-Waterman score: 1724; 99.6% identity (99.6% similar) in 254 aa overlap (37-290:1-254)
10 20 30 40 50 60
pF1KB6 ERLFTSSCLVGLVPLGLRISLVTCPLQCGIMWQLLLPTALLLLVSAGMRTEDLPKAVVFL
::::::::::::::::::::::::::::::
NP_001 MWQLLLPTALLLLVSAGMRTEDLPKAVVFL
10 20 30
70 80 90 100 110 120
pF1KB6 EPQWYRVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EPQWYRVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQ
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 TNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 FHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQGLAVSTISSFFPPGYQVS
::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
NP_001 FHHNSDFYIPKATLKDSGSYFCRGLFGSKNVSSETVNITITQGLAVSTISSFFPPGYQVS
160 170 180 190 200 210
250 260 270 280 290
pF1KB6 FCLVMVLLFAVDTGLYFSVKTNIRSSTRDWKDHKFKWRKDPQDK
::::::::::::::::::::::::::::::::::::::::::::
NP_001 FCLVMVLLFAVDTGLYFSVKTNIRSSTRDWKDHKFKWRKDPQDK
220 230 240 250
>>NP_001121065 (OMIM: 146740,615707) low affinity immuno (254 aa)
initn: 1724 init1: 1724 opt: 1724 Z-score: 1793.1 bits: 339.5 E(85289): 3.9e-93
Smith-Waterman score: 1724; 99.6% identity (99.6% similar) in 254 aa overlap (37-290:1-254)
10 20 30 40 50 60
pF1KB6 ERLFTSSCLVGLVPLGLRISLVTCPLQCGIMWQLLLPTALLLLVSAGMRTEDLPKAVVFL
::::::::::::::::::::::::::::::
NP_001 MWQLLLPTALLLLVSAGMRTEDLPKAVVFL
10 20 30
70 80 90 100 110 120
pF1KB6 EPQWYRVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EPQWYRVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQ
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 TNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 FHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQGLAVSTISSFFPPGYQVS
::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
NP_001 FHHNSDFYIPKATLKDSGSYFCRGLFGSKNVSSETVNITITQGLAVSTISSFFPPGYQVS
160 170 180 190 200 210
250 260 270 280 290
pF1KB6 FCLVMVLLFAVDTGLYFSVKTNIRSSTRDWKDHKFKWRKDPQDK
::::::::::::::::::::::::::::::::::::::::::::
NP_001 FCLVMVLLFAVDTGLYFSVKTNIRSSTRDWKDHKFKWRKDPQDK
220 230 240 250
>>NP_001316049 (OMIM: 146740,615707) low affinity immuno (254 aa)
initn: 1724 init1: 1724 opt: 1724 Z-score: 1793.1 bits: 339.5 E(85289): 3.9e-93
Smith-Waterman score: 1724; 99.6% identity (99.6% similar) in 254 aa overlap (37-290:1-254)
10 20 30 40 50 60
pF1KB6 ERLFTSSCLVGLVPLGLRISLVTCPLQCGIMWQLLLPTALLLLVSAGMRTEDLPKAVVFL
::::::::::::::::::::::::::::::
NP_001 MWQLLLPTALLLLVSAGMRTEDLPKAVVFL
10 20 30
70 80 90 100 110 120
pF1KB6 EPQWYRVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EPQWYRVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQ
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 TNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 FHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQGLAVSTISSFFPPGYQVS
::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
NP_001 FHHNSDFYIPKATLKDSGSYFCRGLFGSKNVSSETVNITITQGLAVSTISSFFPPGYQVS
160 170 180 190 200 210
250 260 270 280 290
pF1KB6 FCLVMVLLFAVDTGLYFSVKTNIRSSTRDWKDHKFKWRKDPQDK
::::::::::::::::::::::::::::::::::::::::::::
NP_001 FCLVMVLLFAVDTGLYFSVKTNIRSSTRDWKDHKFKWRKDPQDK
220 230 240 250
>>NP_001121068 (OMIM: 146740,615707) low affinity immuno (253 aa)
initn: 1603 init1: 1603 opt: 1706 Z-score: 1774.6 bits: 336.1 E(85289): 4.2e-92
Smith-Waterman score: 1706; 99.2% identity (99.2% similar) in 254 aa overlap (37-290:1-253)
10 20 30 40 50 60
pF1KB6 ERLFTSSCLVGLVPLGLRISLVTCPLQCGIMWQLLLPTALLLLVSAGMRTEDLPKAVVFL
:::::::::::::::::::: :::::::::
NP_001 MWQLLLPTALLLLVSAGMRT-DLPKAVVFL
10 20
70 80 90 100 110 120
pF1KB6 EPQWYRVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EPQWYRVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQ
30 40 50 60 70 80
130 140 150 160 170 180
pF1KB6 TNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY
90 100 110 120 130 140
190 200 210 220 230 240
pF1KB6 FHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQGLAVSTISSFFPPGYQVS
::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
NP_001 FHHNSDFYIPKATLKDSGSYFCRGLFGSKNVSSETVNITITQGLAVSTISSFFPPGYQVS
150 160 170 180 190 200
250 260 270 280 290
pF1KB6 FCLVMVLLFAVDTGLYFSVKTNIRSSTRDWKDHKFKWRKDPQDK
::::::::::::::::::::::::::::::::::::::::::::
NP_001 FCLVMVLLFAVDTGLYFSVKTNIRSSTRDWKDHKFKWRKDPQDK
210 220 230 240 250
>>NP_000561 (OMIM: 610665) low affinity immunoglobulin g (233 aa)
initn: 1523 init1: 1523 opt: 1523 Z-score: 1586.2 bits: 301.1 E(85289): 1.3e-81
Smith-Waterman score: 1523; 97.4% identity (98.7% similar) in 233 aa overlap (37-269:1-233)
10 20 30 40 50 60
pF1KB6 ERLFTSSCLVGLVPLGLRISLVTCPLQCGIMWQLLLPTALLLLVSAGMRTEDLPKAVVFL
::::::::::::::::::::::::::::::
NP_000 MWQLLLPTALLLLVSAGMRTEDLPKAVVFL
10 20 30
70 80 90 100 110 120
pF1KB6 EPQWYRVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQ
::::: ::::::::::::::::::::::::::::.::::::::::::::::.::::::::
NP_000 EPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNENLISSQASSYFIDAATVNDSGEYRCQ
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 TNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
NP_000 TNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 FHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQGLAVSTISSFFPPGYQVS
:::::::.:::::::::::::::::::::::::::::::::::::::::::: :::::::
NP_000 FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQGLAVSTISSFSPPGYQVS
160 170 180 190 200 210
250 260 270 280 290
pF1KB6 FCLVMVLLFAVDTGLYFSVKTNIRSSTRDWKDHKFKWRKDPQDK
:::::::::::::::::::::::
NP_000 FCLVMVLLFAVDTGLYFSVKTNI
220 230
>>NP_001257965 (OMIM: 610665) low affinity immunoglobuli (216 aa)
initn: 1416 init1: 1416 opt: 1416 Z-score: 1476.3 bits: 280.7 E(85289): 1.7e-75
Smith-Waterman score: 1416; 97.2% identity (98.6% similar) in 216 aa overlap (54-269:1-216)
30 40 50 60 70 80
pF1KB6 RISLVTCPLQCGIMWQLLLPTALLLLVSAGMRTEDLPKAVVFLEPQWYRVLEKDSVTLKC
:::::::::::::::::: :::::::::::
NP_001 MRTEDLPKAVVFLEPQWYSVLEKDSVTLKC
10 20 30
90 100 110 120 130 140
pF1KB6 QGAYSPEDNSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQTNLSTLSDPVQLEVHIG
:::::::::::::::::.::::::::::::::::.:::::::::::::::::::::::::
NP_001 QGAYSPEDNSTQWFHNENLISSQASSYFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHIG
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB6 WLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDS
::::::::::::::::::::::::::::::::::::::: ::::::::::.:::::::::
NP_001 WLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDS
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB6 GSYFCRGLVGSKNVSSETVNITITQGLAVSTISSFFPPGYQVSFCLVMVLLFAVDTGLYF
::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
NP_001 GSYFCRGLVGSKNVSSETVNITITQGLAVSTISSFSPPGYQVSFCLVMVLLFAVDTGLYF
160 170 180 190 200 210
270 280 290
pF1KB6 SVKTNIRSSTRDWKDHKFKWRKDPQDK
::::::
NP_001 SVKTNI
290 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 19:01:40 2016 done: Fri Nov 4 19:01:41 2016
Total Scan time: 7.390 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]