FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6340, 290 aa
  1>>>pF1KB6340 290 - 290 aa - 290 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8477+/-0.000671; mu= 13.3019+/- 0.041
 mean_var=77.4842+/-15.407, 0's: 0 Z-trim(111.4): 7  B-trim: 59 in 2/49
 Lambda= 0.145703
 statistics sampled from 12345 (12348) to 12345 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.379), width:  16
 Scan time:  2.510

The best scores are:                                      opt bits E(32554)
CCDS12765.1 PIH1D1 gene_id:55011|Hs108|chr19       ( 290) 1923 413.0 1.3e-115


>>CCDS12765.1 PIH1D1 gene_id:55011|Hs108|chr19            (290 aa)
 initn: 1923 init1: 1923 opt: 1923  Z-score: 2189.4  bits: 413.0 E(32554): 1.3e-115
Smith-Waterman score: 1923; 99.0% identity (99.7% similar) in 290 aa overlap (1-290:1-290)

               10        20        30        40        50        60
pF1KB6 MANPKLLGLELSEAEAIGADSARFEELLLQASKELQQAQTTRPESTQIQPQPGFCIKTNS
       ::::::::. ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MANPKLLGMGLSEAEAIGADSARFEELLLQASKELQQAQTTRPESTQIQPQPGFCIKTNS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SEGKVFINICHSPSIPPPADVTEEELLQMLEEDQAGFRIPMSLGEPHAELDAKGQGCTAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SEGKVFINICHSPSIPPPADVTEEELLQMLEEDQAGFRIPMSLGEPHAELDAKGQGCTAY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 DVAVNSDFYRRMQNSDFLRELVITIAREGLEDKYNLQLNPEWRMMKNRPFMGSISQQNIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DVAVNSDFYRRMQNSDFLRELVITIAREGLEDKYNLQLNPEWRMMKNRPFMGSISQQNIR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SEQRPRIQELGDLYTPAPGRAESGPEKPHLNLWLEAPDLLLAEIDLPKLDGALGLSLEIG
       :::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::
CCDS12 SEQRPRIQELGDLYTPAPGRAESGPEKPHLNLWLEAPDLLLAEVDLPKLDGALGLSLEIG
              190       200       210       220       230       240

              250       260       270       280       290
pF1KB6 ENRLVMGGPQQLYHLDAYIPLQINSHESKAAFHRKRKQLMVAMPLLPVPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ENRLVMGGPQQLYHLDAYIPLQINSHESKAAFHRKRKQLMVAMPLLPVPS
              250       260       270       280       290




290 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:32:24 2016 done: Fri Nov  4 20:32:24 2016
 Total Scan time:  2.510 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]