FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6348, 293 aa
  1>>>pF1KB6348 293 - 293 aa - 293 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4276+/-0.00078; mu= 11.3634+/- 0.048
 mean_var=105.2759+/-21.218, 0's: 0 Z-trim(111.3): 30  B-trim: 519 in 1/51
 Lambda= 0.125000
 statistics sampled from 12261 (12290) to 12261 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.74), E-opt: 0.2 (0.378), width:  16
 Scan time:  2.380

The best scores are:                                      opt bits E(32554)
CCDS76866.1 AKTIP gene_id:64400|Hs108|chr16        ( 293) 1997 370.1 1.1e-102
CCDS10749.1 AKTIP gene_id:64400|Hs108|chr16        ( 292) 1979 366.9  1e-101


>>CCDS76866.1 AKTIP gene_id:64400|Hs108|chr16             (293 aa)
 initn: 1997 init1: 1997 opt: 1997  Z-score: 1957.3  bits: 370.1 E(32554): 1.1e-102
Smith-Waterman score: 1997; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)

               10        20        30        40        50        60
pF1KB6 MNPFWSMSTSSVRKRSEGEEKTLTGDVKTSPPRTAPKKQLPSIPKNALPITKPTSPAPAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MNPFWSMSTSSVRKRSEGEEKTLTGDVKTSPPRTAPKKQLPSIPKNALPITKPTSPAPAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QSTNGTHASYGPFYLEYSLLAEFTLVVKQKLPGVYVQPSYRSALMWFGVIFIRHGLYQDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 QSTNGTHASYGPFYLEYSLLAEFTLVVKQKLPGVYVQPSYRSALMWFGVIFIRHGLYQDG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 VFKFTVYIPDNYPDGDCPRLVFDIPVFHPLVDPTSGELDVKRAFAKWRRNHNHIWQVLMY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 VFKFTVYIPDNYPDGDCPRLVFDIPVFHPLVDPTSGELDVKRAFAKWRRNHNHIWQVLMY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 ARRVFYKIDTASPLNPEAAVLYEKDIQLFKSKVVDSVKVCTARLFDQPKIEDPYAISFSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 ARRVFYKIDTASPLNPEAAVLYEKDIQLFKSKVVDSVKVCTARLFDQPKIEDPYAISFSP
              190       200       210       220       230       240

              250       260       270       280       290   
pF1KB6 WNPSVHDEAREKMLTQKKKPEEQHNKSVHVAGLSWVKPGSVQPFSKEEKTVAT
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 WNPSVHDEAREKMLTQKKKPEEQHNKSVHVAGLSWVKPGSVQPFSKEEKTVAT
              250       260       270       280       290   

>>CCDS10749.1 AKTIP gene_id:64400|Hs108|chr16             (292 aa)
 initn: 1771 init1: 1771 opt: 1979  Z-score: 1939.7  bits: 366.9 E(32554): 1e-101
Smith-Waterman score: 1979; 99.7% identity (99.7% similar) in 293 aa overlap (1-293:1-292)

               10        20        30        40        50        60
pF1KB6 MNPFWSMSTSSVRKRSEGEEKTLTGDVKTSPPRTAPKKQLPSIPKNALPITKPTSPAPAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MNPFWSMSTSSVRKRSEGEEKTLTGDVKTSPPRTAPKKQLPSIPKNALPITKPTSPAPAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QSTNGTHASYGPFYLEYSLLAEFTLVVKQKLPGVYVQPSYRSALMWFGVIFIRHGLYQDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QSTNGTHASYGPFYLEYSLLAEFTLVVKQKLPGVYVQPSYRSALMWFGVIFIRHGLYQDG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 VFKFTVYIPDNYPDGDCPRLVFDIPVFHPLVDPTSGELDVKRAFAKWRRNHNHIWQVLMY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VFKFTVYIPDNYPDGDCPRLVFDIPVFHPLVDPTSGELDVKRAFAKWRRNHNHIWQVLMY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 ARRVFYKIDTASPLNPEAAVLYEKDIQLFKSKVVDSVKVCTARLFDQPKIEDPYAISFSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ARRVFYKIDTASPLNPEAAVLYEKDIQLFKSKVVDSVKVCTARLFDQPKIEDPYAISFSP
              190       200       210       220       230       240

              250       260       270       280       290   
pF1KB6 WNPSVHDEAREKMLTQKKKPEEQHNKSVHVAGLSWVKPGSVQPFSKEEKTVAT
       :::::::::::::::::: ::::::::::::::::::::::::::::::::::
CCDS10 WNPSVHDEAREKMLTQKK-PEEQHNKSVHVAGLSWVKPGSVQPFSKEEKTVAT
              250        260       270       280       290  




293 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:47:22 2016 done: Fri Nov  4 22:47:23 2016
 Total Scan time:  2.380 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]