Result of FASTA (omim) for
pF1KB6349
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6349, 266 aa
1>>>pF1KB6349 266 - 266 aa - 266 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2005+/-0.000358; mu= 15.7823+/- 0.022
mean_var=85.6952+/-18.307, 0's: 0 Z-trim(113.9): 117 B-trim: 0 in 0/55
Lambda= 0.138547
statistics sampled from 23328 (23452) to 23328 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.275), width: 16
Scan time: 6.070
The best scores are: opt bits E(85289)
NP_002115 (OMIM: 126200,142857,180300,181000) majo ( 266) 1810 371.6 8.1e-103
NP_001230894 (OMIM: 126200,142857,180300,181000) m ( 266) 1664 342.4 4.9e-94
XP_011546040 (OMIM: 126200,142857,180300,181000) P ( 266) 1637 337.1 2.1e-92
NP_002116 (OMIM: 604776) major histocompatibility ( 266) 1599 329.5 4e-90
NP_072049 (OMIM: 612735) major histocompatibility ( 266) 1596 328.9 6.1e-90
XP_011512864 (OMIM: 604776) PREDICTED: major histo ( 276) 1584 326.5 3.3e-89
NP_001230890 (OMIM: 123400,126200,212750,604305) H ( 269) 1127 235.1 1e-61
NP_001230891 (OMIM: 123400,126200,212750,604305) H ( 261) 1124 234.5 1.5e-61
NP_001287719 (OMIM: 615161) HLA class II histocomp ( 264) 1106 230.9 1.8e-60
XP_005249108 (OMIM: 615161) PREDICTED: HLA class I ( 275) 1103 230.3 2.9e-60
NP_002114 (OMIM: 123400,126200,212750,604305) HLA ( 261) 1102 230.1 3.2e-60
NP_002112 (OMIM: 142858) HLA class II histocompati ( 258) 1085 226.7 3.3e-59
XP_011512862 (OMIM: 615161) PREDICTED: HLA class I ( 256) 1082 226.1 5e-59
NP_002111 (OMIM: 600629) HLA class II histocompati ( 273) 988 207.3 2.4e-53
NP_001185787 (OMIM: 615161) HLA class II histocomp ( 227) 902 190.1 3.1e-48
XP_011512863 (OMIM: 615161) PREDICTED: HLA class I ( 219) 896 188.9 7e-48
NP_620576 (OMIM: 104300,176100,176200,235200,61263 ( 260) 276 65.0 1.6e-10
NP_002109 (OMIM: 142856) HLA class II histocompati ( 263) 275 64.8 1.8e-10
NP_620578 (OMIM: 104300,176100,176200,235200,61263 ( 325) 276 65.1 1.9e-10
XP_011512845 (OMIM: 104300,176100,176200,235200,61 ( 348) 276 65.1 2e-10
NP_000401 (OMIM: 104300,176100,176200,235200,61263 ( 348) 276 65.1 2e-10
NP_001287678 (OMIM: 104300,176100,176200,235200,61 ( 337) 274 64.7 2.5e-10
XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254) 256 61.0 2.5e-09
NP_001176 (OMIM: 194460) zinc-alpha-2-glycoprotein ( 298) 252 60.3 4.9e-09
NP_001522 (OMIM: 600764) major histocompatibility ( 341) 250 59.9 7.1e-09
NP_291032 (OMIM: 142880) HLA class II histocompati ( 260) 240 57.8 2.3e-08
NP_001229454 (OMIM: 142880) HLA class II histocomp ( 260) 240 57.8 2.3e-08
NP_001229453 (OMIM: 142880) HLA class II histocomp ( 260) 240 57.8 2.3e-08
NP_002110 (OMIM: 142930) HLA class II histocompati ( 250) 233 56.4 6e-08
NP_620577 (OMIM: 104300,176100,176200,235200,61263 ( 246) 230 55.8 9e-08
NP_620573 (OMIM: 104300,176100,176200,235200,61263 ( 256) 230 55.8 9.2e-08
NP_620572 (OMIM: 104300,176100,176200,235200,61263 ( 242) 229 55.6 1e-07
NP_620579 (OMIM: 104300,176100,176200,235200,61263 ( 168) 227 55.0 1e-07
NP_620575 (OMIM: 104300,176100,176200,235200,61263 ( 334) 230 55.9 1.1e-07
NP_002113 (OMIM: 146880,212750) HLA class II histo ( 255) 227 55.2 1.4e-07
XP_016866307 (OMIM: 142871,600807) PREDICTED: HLA ( 246) 226 55.0 1.6e-07
XP_016866306 (OMIM: 142871,600807) PREDICTED: HLA ( 246) 226 55.0 1.6e-07
NP_005505 (OMIM: 106300,142830,608579) major histo ( 362) 223 54.5 3.1e-07
NP_002107 (OMIM: 142800,608579) HLA class I histoc ( 365) 223 54.5 3.1e-07
NP_001181928 (OMIM: 600764) major histocompatibili ( 296) 221 54.1 3.6e-07
NP_064440 (OMIM: 613503) HLA class II histocompati ( 255) 216 53.0 6.4e-07
XP_006715142 (OMIM: 146880,212750) PREDICTED: HLA ( 206) 214 52.5 7.2e-07
NP_061984 (OMIM: 142860) HLA class II histocompati ( 254) 209 51.6 1.7e-06
XP_016866304 (OMIM: 143110) PREDICTED: HLA class I ( 228) 208 51.4 1.8e-06
XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343) 209 51.7 2.1e-06
XP_016866303 (OMIM: 143110) PREDICTED: HLA class I ( 324) 208 51.5 2.3e-06
NP_061823 (OMIM: 143110) HLA class I histocompatib ( 346) 208 51.5 2.4e-06
XP_016866302 (OMIM: 143110) PREDICTED: HLA class I ( 388) 208 51.6 2.6e-06
XP_016866301 (OMIM: 143110) PREDICTED: HLA class I ( 420) 208 51.6 2.8e-06
XP_016866300 (OMIM: 143110) PREDICTED: HLA class I ( 431) 208 51.6 2.8e-06
>>NP_002115 (OMIM: 126200,142857,180300,181000) major hi (266 aa)
initn: 1810 init1: 1810 opt: 1810 Z-score: 1966.9 bits: 371.6 E(85289): 8.1e-103
Smith-Waterman score: 1810; 100.0% identity (100.0% similar) in 266 aa overlap (1-266:1-266)
10 20 30 40 50 60
pF1KB6 MVCLKLPGGSCMTALTVTLMVLSSPLALSGDTRPRFLWQPKRECHFFNGTERVRFLDRYF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MVCLKLPGGSCMTALTVTLMVLSSPLALSGDTRPRFLWQPKRECHFFNGTERVRFLDRYF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 YNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 QRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 QRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
190 200 210 220 230 240
250 260
pF1KB6 FLGAGLFIYFRNQKGHSGLQPTGFLS
::::::::::::::::::::::::::
NP_002 FLGAGLFIYFRNQKGHSGLQPTGFLS
250 260
>>NP_001230894 (OMIM: 126200,142857,180300,181000) major (266 aa)
initn: 1664 init1: 1664 opt: 1664 Z-score: 1809.2 bits: 342.4 E(85289): 4.9e-94
Smith-Waterman score: 1664; 91.4% identity (96.6% similar) in 266 aa overlap (1-266:1-266)
10 20 30 40 50 60
pF1KB6 MVCLKLPGGSCMTALTVTLMVLSSPLALSGDTRPRFLWQPKRECHFFNGTERVRFLDRYF
::::.:::::::..::::::::::::::.:::::::: ::::::::::::.:::::
NP_001 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTV
.::::.:::::::::::::::::::::::::::::.::: :. ::.::::::::::::::
NP_001 HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 QRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQNG
::::.:::::::::::::::::::::::::::::::::::: ::::::.:.::::::.::
NP_001 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
190 200 210 220 230 240
250 260
pF1KB6 FLGAGLFIYFRNQKGHSGLQPTGFLS
::::::::::::::::::::: ::::
NP_001 FLGAGLFIYFRNQKGHSGLQPRGFLS
250 260
>>XP_011546040 (OMIM: 126200,142857,180300,181000) PREDI (266 aa)
initn: 1637 init1: 1637 opt: 1637 Z-score: 1780.0 bits: 337.1 E(85289): 2.1e-92
Smith-Waterman score: 1637; 90.6% identity (95.5% similar) in 266 aa overlap (1-266:1-266)
10 20 30 40 50 60
pF1KB6 MVCLKLPGGSCMTALTVTLMVLSSPLALSGDTRPRFLWQPKRECHFFNGTERVRFLDRYF
::::::::::::.:::::::::::::::.:::.:::::: : .::::::::::.::.: :
XP_011 MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLWQGKYKCHFFNGTERVQFLERLF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTV
::::: :::::::::.::::::::: :: :::::::::. :. ::: ::::::: :::::
XP_011 YNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 QRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQNG
::::.:.:::::.:::::::::::::::::::::::::::: ::::::::.:::::::::
XP_011 QRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
XP_011 DWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLL
190 200 210 220 230 240
250 260
pF1KB6 FLGAGLFIYFRNQKGHSGLQPTGFLS
::::::::::::::::::::::::::
XP_011 FLGAGLFIYFRNQKGHSGLQPTGFLS
250 260
>>NP_002116 (OMIM: 604776) major histocompatibility comp (266 aa)
initn: 1619 init1: 1599 opt: 1599 Z-score: 1739.0 bits: 329.5 E(85289): 4e-90
Smith-Waterman score: 1599; 88.7% identity (95.9% similar) in 266 aa overlap (1-266:1-266)
10 20 30 40 50 60
pF1KB6 MVCLKLPGGSCMTALTVTLMVLSSPLALSGDTRPRFLWQPKRECHFFNGTERVRFLDRYF
:::::::::: :. ::::::::::::::.:::::::: : : :::::::::::::: : .
NP_002 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTV
:::::..::::::::.:::::::::::::::::::.::. :::::::::::::: :::::
NP_002 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 QRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQNG
::::.:::::::..:: :::::::::::.:::::::::::: :.::::::.:::::::::
NP_002 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_002 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL
190 200 210 220 230 240
250 260
pF1KB6 FLGAGLFIYFRNQKGHSGLQPTGFLS
::::::::::.::::::::.:::..:
NP_002 FLGAGLFIYFKNQKGHSGLHPTGLVS
250 260
>>NP_072049 (OMIM: 612735) major histocompatibility comp (266 aa)
initn: 1596 init1: 1596 opt: 1596 Z-score: 1735.7 bits: 328.9 E(85289): 6.1e-90
Smith-Waterman score: 1596; 89.1% identity (94.7% similar) in 266 aa overlap (1-266:1-266)
10 20 30 40 50 60
pF1KB6 MVCLKLPGGSCMTALTVTLMVLSSPLALSGDTRPRFLWQPKRECHFFNGTERVRFLDRYF
:::::::::: ..::::::::::: ::..:::::::: : ::::::::::::.:::::
NP_072 MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELRKSECHFFNGTERVRYLDRYF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTV
.:::: .::::::::.::::::::: :: ::::::.::: :. ::.:::::::: :::::
NP_072 HNQEEFLRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRGRVDNYCRHNYGVGESFTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 QRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQNG
::::.:.:::::.:::::::::::::::::::::::::::: ::::::::.:::::::::
NP_072 QRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::
NP_072 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSALTVEWRARSESAQSKMLSGVGGFVLGLL
190 200 210 220 230 240
250 260
pF1KB6 FLGAGLFIYFRNQKGHSGLQPTGFLS
::::::::::::::::::::::::::
NP_072 FLGAGLFIYFRNQKGHSGLQPTGFLS
250 260
>>XP_011512864 (OMIM: 604776) PREDICTED: major histocomp (276 aa)
initn: 1584 init1: 1584 opt: 1584 Z-score: 1722.6 bits: 326.5 E(85289): 3.3e-89
Smith-Waterman score: 1584; 89.3% identity (95.8% similar) in 262 aa overlap (1-262:1-262)
10 20 30 40 50 60
pF1KB6 MVCLKLPGGSCMTALTVTLMVLSSPLALSGDTRPRFLWQPKRECHFFNGTERVRFLDRYF
:::::::::: :. ::::::::::::::.:::::::: : : :::::::::::::: : .
XP_011 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTV
:::::..::::::::.:::::::::::::::::::.::. :::::::::::::: :::::
XP_011 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 QRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQNG
::::.:::::::..:: :::::::::::.:::::::::::: :.::::::.:::::::::
XP_011 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
XP_011 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL
190 200 210 220 230 240
250 260
pF1KB6 FLGAGLFIYFRNQKGHSGLQPTGFLS
::::::::::.::::::::.::
XP_011 FLGAGLFIYFKNQKGHSGLHPTVLSSESLKERKRSC
250 260 270
>>NP_001230890 (OMIM: 123400,126200,212750,604305) HLA c (269 aa)
initn: 1125 init1: 1098 opt: 1127 Z-score: 1229.0 bits: 235.1 E(85289): 1e-61
Smith-Waterman score: 1127; 64.1% identity (82.4% similar) in 262 aa overlap (4-265:7-268)
10 20 30 40 50
pF1KB6 MVCLKLPGGSCMTALTVTLMVLSSPLALSGDTRPRFLWQPKRECHFFNGTERVRFLD
:..:: ....:. : .::: :: . :. :..: : :.: :::::::..
NP_001 MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 RYFYNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVES
::.::.:: .::::::: .:::: ::::::::::::..:: .:: .:: ::::: :.
NP_001 RYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFR
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 FTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLI
.::::.: ::. ::.:. :.:::::::::. ::::.:.:::: : ::: ::.::: ::
NP_001 GILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLI
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 QNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVL
.::::::: ::::: .:. :.::::.:::::. ::.::::::.:::::::::::::::::
NP_001 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVL
190 200 210 220 230 240
240 250 260
pF1KB6 GLLFLGAGLFIYFRNQKGHSGLQPTGFLS
::.::: ::.: :.::: .: :.:.:
NP_001 GLIFLGLGLIIRQRSQKGPQGPPPAGLLH
250 260
>>NP_001230891 (OMIM: 123400,126200,212750,604305) HLA c (261 aa)
initn: 1121 init1: 1121 opt: 1124 Z-score: 1226.0 bits: 234.5 E(85289): 1.5e-61
Smith-Waterman score: 1124; 66.9% identity (83.5% similar) in 254 aa overlap (4-255:7-258)
10 20 30 40 50
pF1KB6 MVCLKLPGGSCMTALTVTLMV--LSSPLALSGDTRPRFLWQPKRECHFFNGTERVRF
:..::: . : :::::. ::.:.: . :. :..: : :.: :::::::.
NP_001 MSWKKALRIPGG--LRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRL
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 LDRYFYNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVV
..: .::.:: :::::::::::::: :: : ::::::::::::. ::::: ::::: .
NP_001 VSRSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 ESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTG
:.::::.: ::. ::.:. :.:::::::::. :::..:.:::: : ::: ::.:::
NP_001 LRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTP
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 LIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGF
::.::::::: ::::: .:. :.::::.:::::. ::.::::::.:::::::::::.:::
NP_001 LIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGF
180 190 200 210 220 230
240 250 260
pF1KB6 VLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS
::::.::: ::.:. :.:::
NP_001 VLGLIFLGLGLIIHHRSQKGLLH
240 250 260
>>NP_001287719 (OMIM: 615161) HLA class II histocompatib (264 aa)
initn: 1083 init1: 809 opt: 1106 Z-score: 1206.4 bits: 230.9 E(85289): 1.8e-60
Smith-Waterman score: 1106; 64.1% identity (81.3% similar) in 262 aa overlap (4-265:3-263)
10 20 30 40 50 60
pF1KB6 MVCLKLPGGSCMTALTVTLMVLSSPLALSGDTRPRFLWQPKRECHFFNGTERVRFLDRYF
:..::: .:.:: :..::.:.: . : :: : : :.: ::::::: . ::.
NP_001 MALQIPGGFWAAAVTVMLVMLSTPVAEARDFPKDFLVQFKGMCYFTNGTERVRGVARYI
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 YNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTV
::.:: :::::::::.::::::: . : ::. ::.::: ::::: ::::: . :.
NP_001 YNREEYGRFDSDVGEFQAVTELGR-SIEDWNNYKDFLEQERAAVDKVCRHNYEAELRTTL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 QRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQNG
::.:.: ::. ::.:. :.:::::::::. :::..:.:::: : ::: ::.:::.::.::
NP_001 QRQVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTSLIRNG
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
::::: ::::: .:. :..:::::::::. ::.::::::.:::::::::::.:::::::.
NP_001 DWTFQILVMLEITPQRGDIYTCQVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLI
180 190 200 210 220 230
250 260
pF1KB6 FLGAGLFIYFRNQKGHSGLQPTGFLS
::: ::.: :.::: : :.:.:
NP_001 FLGLGLIIRHRGQKGPRGPPPAGLLH
240 250 260
>>XP_005249108 (OMIM: 615161) PREDICTED: HLA class II hi (275 aa)
initn: 1083 init1: 809 opt: 1103 Z-score: 1203.0 bits: 230.3 E(85289): 2.9e-60
Smith-Waterman score: 1103; 63.9% identity (81.0% similar) in 263 aa overlap (4-266:3-264)
10 20 30 40 50 60
pF1KB6 MVCLKLPGGSCMTALTVTLMVLSSPLALSGDTRPRFLWQPKRECHFFNGTERVRFLDRYF
:..::: .:.:: :..::.:.: . : :: : : :.: ::::::: . ::.
XP_005 MALQIPGGFWAAAVTVMLVMLSTPVAEARDFPKDFLVQFKGMCYFTNGTERVRGVARYI
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 YNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTV
::.:: :::::::::.::::::: . : ::. ::.::: ::::: ::::: . :.
XP_005 YNREEYGRFDSDVGEFQAVTELGR-SIEDWNNYKDFLEQERAAVDKVCRHNYEAELRTTL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 QRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQNG
::.:.: ::. ::.:. :.:::::::::. :::..:.:::: : ::: ::.:::.::.::
XP_005 QRQVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTSLIRNG
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
::::: ::::: .:. :..:::::::::. ::.::::::.:::::::::::.:::::::.
XP_005 DWTFQILVMLEITPQRGDIYTCQVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLI
180 190 200 210 220 230
250 260
pF1KB6 FLGAGLFIYFRNQKGHSGLQPTGFLS
::: ::.: :.::: : :.: .:
XP_005 FLGLGLIIRHRGQKGPRGPPPAGNISAMIQSGERAQA
240 250 260 270
266 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:47:20 2016 done: Fri Nov 4 18:47:21 2016
Total Scan time: 6.070 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]