FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6352, 293 aa
  1>>>pF1KB6352 293 - 293 aa - 293 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3970+/-0.000695; mu= 16.4819+/- 0.042
 mean_var=81.0938+/-15.999, 0's: 0 Z-trim(111.3): 9  B-trim: 0 in 0/53
 Lambda= 0.142423
 statistics sampled from 12230 (12233) to 12230 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.376), width:  16
 Scan time:  2.710

The best scores are:                                      opt bits E(32554)
CCDS10635.1 SGF29 gene_id:112869|Hs108|chr16       ( 293) 1938 407.2 7.6e-114


>>CCDS10635.1 SGF29 gene_id:112869|Hs108|chr16            (293 aa)
 initn: 1938 init1: 1938 opt: 1938  Z-score: 2157.4  bits: 407.2 E(32554): 7.6e-114
Smith-Waterman score: 1938; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)

               10        20        30        40        50        60
pF1KB6 MALVSADSRIAELLTELHQLIKQTQEERSRSEHNLVNIQKTHERMQTENKISPYYRTKLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MALVSADSRIAELLTELHQLIKQTQEERSRSEHNLVNIQKTHERMQTENKISPYYRTKLR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GLYTTAKADAEAECNILRKALDKIAEIKSLLEERRIAAKIAGLYNDSEPPRKTMRRGVLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GLYTTAKADAEAECNILRKALDKIAEIKSLLEERRIAAKIAGLYNDSEPPRKTMRRGVLM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 TLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVARPGDKVAARVKAVDGDEQWILAEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVARPGDKVAARVKAVDGDEQWILAEV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 VSYSHATNKYEVDDIDEEGKERHTLSRRRVIPLPQWKANPETDPEALFQKEQLVLALYPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VSYSHATNKYEVDDIDEEGKERHTLSRRRVIPLPQWKANPETDPEALFQKEQLVLALYPQ
              190       200       210       220       230       240

              250       260       270       280       290   
pF1KB6 TTCFYRALIHAPPQRPQDDYSVLFEDTSYADGYSPPLNVAQRYVVACKEPKKK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TTCFYRALIHAPPQRPQDDYSVLFEDTSYADGYSPPLNVAQRYVVACKEPKKK
              250       260       270       280       290   




293 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:34:41 2016 done: Fri Nov  4 20:34:42 2016
 Total Scan time:  2.710 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]