FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6355, 266 aa
  1>>>pF1KB6355 266 - 266 aa - 266 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0177+/-0.00108; mu= 2.2687+/- 0.064
 mean_var=164.9378+/-36.533, 0's: 0 Z-trim(108.8): 107  B-trim: 563 in 1/50
 Lambda= 0.099865
 statistics sampled from 10309 (10426) to 10309 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.687), E-opt: 0.2 (0.32), width:  16
 Scan time:  2.250

The best scores are:                                      opt bits E(32554)
CCDS8370.1 RBM7 gene_id:10179|Hs108|chr11          ( 266) 1820 274.0 7.5e-74
CCDS66233.1 RBM7 gene_id:10179|Hs108|chr11         ( 267) 1808 272.3 2.5e-73
CCDS73395.1 RBM7 gene_id:10179|Hs108|chr11         ( 146) 1030 160.0 8.4e-40
CCDS46635.1 RBM11 gene_id:54033|Hs108|chr21        ( 281)  424 72.9 2.7e-13


>>CCDS8370.1 RBM7 gene_id:10179|Hs108|chr11               (266 aa)
 initn: 1820 init1: 1820 opt: 1820  Z-score: 1439.4  bits: 274.0 E(32554): 7.5e-74
Smith-Waterman score: 1820; 100.0% identity (100.0% similar) in 266 aa overlap (1-266:1-266)

               10        20        30        40        50        60
pF1KB6 MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSRYERT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 VSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSRYERT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 MDNMTSSAQIIQRSFSSPENFQRQAVMNSALRQMSYGGKFGSSPLDQSGFSPSVQSHSHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MDNMTSSAQIIQRSFSSPENFQRQAVMNSALRQMSYGGKFGSSPLDQSGFSPSVQSHSHS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 FNQSSSSQWRQGTPSSQRKVRMNSYPYLADRHYSREQRYTDHGSDHHYRGKRDDFFYEDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 FNQSSSSQWRQGTPSSQRKVRMNSYPYLADRHYSREQRYTDHGSDHHYRGKRDDFFYEDR
              190       200       210       220       230       240

              250       260      
pF1KB6 NHDDWSHDYDNRRDSSRDGKWRSSRH
       ::::::::::::::::::::::::::
CCDS83 NHDDWSHDYDNRRDSSRDGKWRSSRH
              250       260      

>>CCDS66233.1 RBM7 gene_id:10179|Hs108|chr11              (267 aa)
 initn: 1076 init1: 1076 opt: 1808  Z-score: 1430.0  bits: 272.3 E(32554): 2.5e-73
Smith-Waterman score: 1808; 99.6% identity (99.6% similar) in 267 aa overlap (1-266:1-267)

               10        20        30        40        50        60
pF1KB6 MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHE
               10        20        30        40        50        60

               70        80        90       100       110          
pF1KB6 VSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPS-RYER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
CCDS66 VSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSSRYER
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB6 TMDNMTSSAQIIQRSFSSPENFQRQAVMNSALRQMSYGGKFGSSPLDQSGFSPSVQSHSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 TMDNMTSSAQIIQRSFSSPENFQRQAVMNSALRQMSYGGKFGSSPLDQSGFSPSVQSHSH
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KB6 SFNQSSSSQWRQGTPSSQRKVRMNSYPYLADRHYSREQRYTDHGSDHHYRGKRDDFFYED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SFNQSSSSQWRQGTPSSQRKVRMNSYPYLADRHYSREQRYTDHGSDHHYRGKRDDFFYED
              190       200       210       220       230       240

     240       250       260      
pF1KB6 RNHDDWSHDYDNRRDSSRDGKWRSSRH
       :::::::::::::::::::::::::::
CCDS66 RNHDDWSHDYDNRRDSSRDGKWRSSRH
              250       260       

>>CCDS73395.1 RBM7 gene_id:10179|Hs108|chr11              (146 aa)
 initn: 1030 init1: 1030 opt: 1030  Z-score: 828.0  bits: 160.0 E(32554): 8.4e-40
Smith-Waterman score: 1030; 100.0% identity (100.0% similar) in 146 aa overlap (121-266:1-146)

              100       110       120       130       140       150
pF1KB6 APQDVSLSYPQHHVGNSSPTSTSPSRYERTMDNMTSSAQIIQRSFSSPENFQRQAVMNSA
                                     ::::::::::::::::::::::::::::::
CCDS73                               MDNMTSSAQIIQRSFSSPENFQRQAVMNSA
                                             10        20        30

              160       170       180       190       200       210
pF1KB6 LRQMSYGGKFGSSPLDQSGFSPSVQSHSHSFNQSSSSQWRQGTPSSQRKVRMNSYPYLAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LRQMSYGGKFGSSPLDQSGFSPSVQSHSHSFNQSSSSQWRQGTPSSQRKVRMNSYPYLAD
               40        50        60        70        80        90

              220       230       240       250       260      
pF1KB6 RHYSREQRYTDHGSDHHYRGKRDDFFYEDRNHDDWSHDYDNRRDSSRDGKWRSSRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RHYSREQRYTDHGSDHHYRGKRDDFFYEDRNHDDWSHDYDNRRDSSRDGKWRSSRH
              100       110       120       130       140      

>>CCDS46635.1 RBM11 gene_id:54033|Hs108|chr21             (281 aa)
 initn: 426 init1: 394 opt: 424  Z-score: 352.1  bits: 72.9 E(32554): 2.7e-13
Smith-Waterman score: 427; 34.5% identity (60.6% similar) in 284 aa overlap (1-265:1-276)

               10        20        30        40        50        60
pF1KB6 MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHE
       :  :  :::::.::::::..: ::.:.::: ::::. :: : ::..::::.:.:: ::: 
CCDS46 MFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSRYERT
        :: ::. :::::.::::::..:.: :::.. . .. :.      .    ..   : :. 
CCDS46 ESVSYAIALLNGIRLYGRPINVQYRFGSSRSSEPANQSFE-----SCVKINSHNYRNEEM
               70        80        90       100            110     

               130        140            150       160       170   
pF1KB6 MDNMTS-SAQIIQRSFSS-PEN---FQRQA--VMNSALRQMSYGGKFGSSPLDQSGFSPS
       . . .:   : .  . .: :..   ::..   :.: .: :. :     ..:: .:.   :
CCDS46 LVGRSSFPMQYFPINNTSLPQEYFLFQKMQWHVYNPVL-QLPY--YEMTAPLPNSASVSS
         120       130       140       150          160       170  

           180        190       200        210             220     
pF1KB6 VQSHSHSFNQSSSS-QWRQGTPSSQRKVRMNS-YPYLADRHYSR------EQRYTDHGSD
         .:  ... . :: .: .  ::..   .:..  :  :.   :       :   ...   
CCDS46 SLNHVPDLEAGPSSYKWTHQQPSDSDLYQMTAPLPNSASVSSSLNHVPDLEAGPSSYKWT
            180       190       200       210       220       230  

         230       240       250           260          
pF1KB6 HHYRGKRDDFFYEDRNHDDWSHDYDNRRDSSRDG----KWRSSRH    
       :.  .  : . .. :...  . : :.  :..: .    :.:.:.     
CCDS46 HQQPSDSDLYQMNKRKRQKQTSDSDSSTDNNRGNECSQKFRKSKKKKRY
            240       250       260       270       280 




266 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:37:02 2016 done: Fri Nov  4 20:37:02 2016
 Total Scan time:  2.250 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]