Result of FASTA (omim) for
pF1KB6358
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6358, 296 aa
1>>>pF1KB6358 296 - 296 aa - 296 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4293+/-0.000293; mu= 10.8457+/- 0.018
mean_var=105.9341+/-21.894, 0's: 0 Z-trim(120.5): 37 B-trim: 1459 in 2/55
Lambda= 0.124611
statistics sampled from 35723 (35769) to 35723 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.76), E-opt: 0.2 (0.419), width: 16
Scan time: 7.780
The best scores are: opt bits E(85289)
NP_036300 (OMIM: 607112) F-box only protein 2 [Hom ( 296) 2084 384.6 1.2e-106
XP_006710634 (OMIM: 605647) PREDICTED: F-box only ( 293) 895 170.9 2.7e-42
XP_005263506 (OMIM: 605647) PREDICTED: F-box only ( 293) 895 170.9 2.7e-42
XP_011539534 (OMIM: 605647) PREDICTED: F-box only ( 293) 895 170.9 2.7e-42
XP_016856496 (OMIM: 605647) PREDICTED: F-box only ( 293) 895 170.9 2.7e-42
XP_005263508 (OMIM: 605647) PREDICTED: F-box only ( 293) 895 170.9 2.7e-42
XP_005263505 (OMIM: 605647) PREDICTED: F-box only ( 293) 895 170.9 2.7e-42
NP_060908 (OMIM: 605647) F-box only protein 6 [Hom ( 293) 895 170.9 2.7e-42
NP_001291720 (OMIM: 609111) F-box only protein 44 ( 255) 867 165.8 7.9e-41
XP_016858332 (OMIM: 609111) PREDICTED: F-box only ( 255) 867 165.8 7.9e-41
NP_149438 (OMIM: 609111) F-box only protein 44 iso ( 255) 867 165.8 7.9e-41
NP_001014765 (OMIM: 609111) F-box only protein 44 ( 255) 867 165.8 7.9e-41
XP_006711108 (OMIM: 609111) PREDICTED: F-box only ( 255) 867 165.8 7.9e-41
NP_849142 (OMIM: 609099) F-box only protein 27 [Ho ( 283) 664 129.3 8.3e-30
NP_079183 (OMIM: 609094) F-box only protein 17 iso ( 278) 501 100.0 5.4e-21
NP_680474 (OMIM: 609094) F-box only protein 17 iso ( 287) 501 100.0 5.6e-21
XP_016881779 (OMIM: 609099) PREDICTED: F-box only ( 249) 500 99.8 5.6e-21
NP_904320 (OMIM: 609111) F-box only protein 44 iso ( 224) 367 75.9 8.2e-14
NP_001291719 (OMIM: 609111) F-box only protein 44 ( 224) 367 75.9 8.2e-14
XP_016858333 (OMIM: 609111) PREDICTED: F-box only ( 224) 367 75.9 8.2e-14
NP_904319 (OMIM: 609111) F-box only protein 44 iso ( 224) 367 75.9 8.2e-14
NP_001001414 (OMIM: 615901) F-box only protein 50 ( 275) 366 75.8 1.1e-13
XP_005263594 (OMIM: 609111) PREDICTED: F-box only ( 256) 363 75.2 1.5e-13
XP_011540737 (OMIM: 609111) PREDICTED: F-box only ( 256) 363 75.2 1.5e-13
XP_016858331 (OMIM: 609111) PREDICTED: F-box only ( 256) 363 75.2 1.5e-13
XP_006711106 (OMIM: 609111) PREDICTED: F-box only ( 256) 363 75.2 1.5e-13
NP_001317284 (OMIM: 609111) F-box only protein 44 ( 256) 363 75.2 1.5e-13
XP_005263593 (OMIM: 609111) PREDICTED: F-box only ( 256) 363 75.2 1.5e-13
XP_011525208 (OMIM: 615901) PREDICTED: F-box only ( 195) 190 44.0 0.00028
>>NP_036300 (OMIM: 607112) F-box only protein 2 [Homo sa (296 aa)
initn: 2084 init1: 2084 opt: 2084 Z-score: 2035.5 bits: 384.6 E(85289): 1.2e-106
Smith-Waterman score: 2084; 100.0% identity (100.0% similar) in 296 aa overlap (1-296:1-296)
10 20 30 40 50 60
pF1KB6 MDGDGDPESVGQPEEASPEEQPEEASAEEERPEDQQEEEAAAAAAYLDELPEPLLLRVLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MDGDGDPESVGQPEEASPEEQPEEASAEEERPEDQQEEEAAAAAAYLDELPEPLLLRVLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ALPAAELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGGVEEERDHWQQFYFLSKRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 ALPAAELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGGVEEERDHWQQFYFLSKRR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 RNLLRNPCGEEDLEGWCDVEHGGDGWRVEELPGDSGVEFTHDESVKKYFASSFEWCRKAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 RNLLRNPCGEEDLEGWCDVEHGGDGWRVEELPGDSGVEFTHDESVKKYFASSFEWCRKAQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 VIDLQAEGYWEELLDTTQPAIVVKDWYSGRSDAGCLYELTVKLLSEHENVLAEFSSGQVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 VIDLQAEGYWEELLDTTQPAIVVKDWYSGRSDAGCLYELTVKLLSEHENVLAEFSSGQVA
190 200 210 220 230 240
250 260 270 280 290
pF1KB6 VPQDSDGGGWMEISHTFTDYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 VPQDSDGGGWMEISHTFTDYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP
250 260 270 280 290
>>XP_006710634 (OMIM: 605647) PREDICTED: F-box only prot (293 aa)
initn: 835 init1: 299 opt: 895 Z-score: 880.3 bits: 170.9 E(85289): 2.7e-42
Smith-Waterman score: 895; 50.2% identity (72.9% similar) in 255 aa overlap (42-296:8-259)
20 30 40 50 60 70
pF1KB6 QPEEASPEEQPEEASAEEERPEDQQEEEAAAAAAYLDELPEPLLLRVLAALPAAELVQAC
:: ..:::: .::.... .:: .:. :
XP_006 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNC
10 20 30
80 90 100 110 120 130
pF1KB6 RLVCLRWKELVDGAPLWLLKCQQEGLVPEGGVEEERDHWQQFYFLSKRRRNLLRNPCGEE
:::: :..:.: :: :: .::.. . . : :. :::: . .::::::::.::
XP_006 RLVCSLWRDLIDLMTLWKRKCLREGFITKDWDQPVAD-WKIFYFLRSLHRNLLRNPCAEE
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB6 DLEGWCDVEHGGDGWRVEELPGDSGVEFTHDESVKKYFASSFEWCRKAQVIDLQAEGYWE
:. .: .::: :.:: ::: :..: : .:::::..:.: : :.:..:: ::::::
XP_006 DMFAWQIDFNGGDRWKVESLPGAHGTDFP-DPKVKKYFVTSYEMCLKSQLVDLVAEGYWE
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB6 ELLDTTQPAIVVKDWYSGRSDAGCLYELTVKLLSEHENVLAEFSSGQVAVPQDSDGGGWM
::::: .: ::::::...:.: :: :.: :.: : ::: : :.. :. ... :
XP_006 ELLDTFRPDIVVKDWFAARADCGCTYQLKVQLASADYFVLASFEPPPVTI-QQWNNATWT
160 170 180 190 200 210
260 270 280 290
pF1KB6 EISHTFTDYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP
:.:.::.:: :::.. :.:::.:. :: ::.: ::::::. : :
XP_006 EVSYTFSDYPRGVRYILFQHGGRDTQYWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQ
220 230 240 250 260 270
XP_006 KHGQEEAAQSPYRAVVQIF
280 290
>>XP_005263506 (OMIM: 605647) PREDICTED: F-box only prot (293 aa)
initn: 835 init1: 299 opt: 895 Z-score: 880.3 bits: 170.9 E(85289): 2.7e-42
Smith-Waterman score: 895; 50.2% identity (72.9% similar) in 255 aa overlap (42-296:8-259)
20 30 40 50 60 70
pF1KB6 QPEEASPEEQPEEASAEEERPEDQQEEEAAAAAAYLDELPEPLLLRVLAALPAAELVQAC
:: ..:::: .::.... .:: .:. :
XP_005 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNC
10 20 30
80 90 100 110 120 130
pF1KB6 RLVCLRWKELVDGAPLWLLKCQQEGLVPEGGVEEERDHWQQFYFLSKRRRNLLRNPCGEE
:::: :..:.: :: :: .::.. . . : :. :::: . .::::::::.::
XP_005 RLVCSLWRDLIDLMTLWKRKCLREGFITKDWDQPVAD-WKIFYFLRSLHRNLLRNPCAEE
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB6 DLEGWCDVEHGGDGWRVEELPGDSGVEFTHDESVKKYFASSFEWCRKAQVIDLQAEGYWE
:. .: .::: :.:: ::: :..: : .:::::..:.: : :.:..:: ::::::
XP_005 DMFAWQIDFNGGDRWKVESLPGAHGTDFP-DPKVKKYFVTSYEMCLKSQLVDLVAEGYWE
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB6 ELLDTTQPAIVVKDWYSGRSDAGCLYELTVKLLSEHENVLAEFSSGQVAVPQDSDGGGWM
::::: .: ::::::...:.: :: :.: :.: : ::: : :.. :. ... :
XP_005 ELLDTFRPDIVVKDWFAARADCGCTYQLKVQLASADYFVLASFEPPPVTI-QQWNNATWT
160 170 180 190 200 210
260 270 280 290
pF1KB6 EISHTFTDYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP
:.:.::.:: :::.. :.:::.:. :: ::.: ::::::. : :
XP_005 EVSYTFSDYPRGVRYILFQHGGRDTQYWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQ
220 230 240 250 260 270
XP_005 KHGQEEAAQSPYRAVVQIF
280 290
>>XP_011539534 (OMIM: 605647) PREDICTED: F-box only prot (293 aa)
initn: 835 init1: 299 opt: 895 Z-score: 880.3 bits: 170.9 E(85289): 2.7e-42
Smith-Waterman score: 895; 50.2% identity (72.9% similar) in 255 aa overlap (42-296:8-259)
20 30 40 50 60 70
pF1KB6 QPEEASPEEQPEEASAEEERPEDQQEEEAAAAAAYLDELPEPLLLRVLAALPAAELVQAC
:: ..:::: .::.... .:: .:. :
XP_011 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNC
10 20 30
80 90 100 110 120 130
pF1KB6 RLVCLRWKELVDGAPLWLLKCQQEGLVPEGGVEEERDHWQQFYFLSKRRRNLLRNPCGEE
:::: :..:.: :: :: .::.. . . : :. :::: . .::::::::.::
XP_011 RLVCSLWRDLIDLMTLWKRKCLREGFITKDWDQPVAD-WKIFYFLRSLHRNLLRNPCAEE
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB6 DLEGWCDVEHGGDGWRVEELPGDSGVEFTHDESVKKYFASSFEWCRKAQVIDLQAEGYWE
:. .: .::: :.:: ::: :..: : .:::::..:.: : :.:..:: ::::::
XP_011 DMFAWQIDFNGGDRWKVESLPGAHGTDFP-DPKVKKYFVTSYEMCLKSQLVDLVAEGYWE
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB6 ELLDTTQPAIVVKDWYSGRSDAGCLYELTVKLLSEHENVLAEFSSGQVAVPQDSDGGGWM
::::: .: ::::::...:.: :: :.: :.: : ::: : :.. :. ... :
XP_011 ELLDTFRPDIVVKDWFAARADCGCTYQLKVQLASADYFVLASFEPPPVTI-QQWNNATWT
160 170 180 190 200 210
260 270 280 290
pF1KB6 EISHTFTDYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP
:.:.::.:: :::.. :.:::.:. :: ::.: ::::::. : :
XP_011 EVSYTFSDYPRGVRYILFQHGGRDTQYWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQ
220 230 240 250 260 270
XP_011 KHGQEEAAQSPYRAVVQIF
280 290
>>XP_016856496 (OMIM: 605647) PREDICTED: F-box only prot (293 aa)
initn: 835 init1: 299 opt: 895 Z-score: 880.3 bits: 170.9 E(85289): 2.7e-42
Smith-Waterman score: 895; 50.2% identity (72.9% similar) in 255 aa overlap (42-296:8-259)
20 30 40 50 60 70
pF1KB6 QPEEASPEEQPEEASAEEERPEDQQEEEAAAAAAYLDELPEPLLLRVLAALPAAELVQAC
:: ..:::: .::.... .:: .:. :
XP_016 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNC
10 20 30
80 90 100 110 120 130
pF1KB6 RLVCLRWKELVDGAPLWLLKCQQEGLVPEGGVEEERDHWQQFYFLSKRRRNLLRNPCGEE
:::: :..:.: :: :: .::.. . . : :. :::: . .::::::::.::
XP_016 RLVCSLWRDLIDLMTLWKRKCLREGFITKDWDQPVAD-WKIFYFLRSLHRNLLRNPCAEE
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB6 DLEGWCDVEHGGDGWRVEELPGDSGVEFTHDESVKKYFASSFEWCRKAQVIDLQAEGYWE
:. .: .::: :.:: ::: :..: : .:::::..:.: : :.:..:: ::::::
XP_016 DMFAWQIDFNGGDRWKVESLPGAHGTDFP-DPKVKKYFVTSYEMCLKSQLVDLVAEGYWE
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB6 ELLDTTQPAIVVKDWYSGRSDAGCLYELTVKLLSEHENVLAEFSSGQVAVPQDSDGGGWM
::::: .: ::::::...:.: :: :.: :.: : ::: : :.. :. ... :
XP_016 ELLDTFRPDIVVKDWFAARADCGCTYQLKVQLASADYFVLASFEPPPVTI-QQWNNATWT
160 170 180 190 200 210
260 270 280 290
pF1KB6 EISHTFTDYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP
:.:.::.:: :::.. :.:::.:. :: ::.: ::::::. : :
XP_016 EVSYTFSDYPRGVRYILFQHGGRDTQYWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQ
220 230 240 250 260 270
XP_016 KHGQEEAAQSPYRAVVQIF
280 290
>>XP_005263508 (OMIM: 605647) PREDICTED: F-box only prot (293 aa)
initn: 835 init1: 299 opt: 895 Z-score: 880.3 bits: 170.9 E(85289): 2.7e-42
Smith-Waterman score: 895; 50.2% identity (72.9% similar) in 255 aa overlap (42-296:8-259)
20 30 40 50 60 70
pF1KB6 QPEEASPEEQPEEASAEEERPEDQQEEEAAAAAAYLDELPEPLLLRVLAALPAAELVQAC
:: ..:::: .::.... .:: .:. :
XP_005 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNC
10 20 30
80 90 100 110 120 130
pF1KB6 RLVCLRWKELVDGAPLWLLKCQQEGLVPEGGVEEERDHWQQFYFLSKRRRNLLRNPCGEE
:::: :..:.: :: :: .::.. . . : :. :::: . .::::::::.::
XP_005 RLVCSLWRDLIDLMTLWKRKCLREGFITKDWDQPVAD-WKIFYFLRSLHRNLLRNPCAEE
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB6 DLEGWCDVEHGGDGWRVEELPGDSGVEFTHDESVKKYFASSFEWCRKAQVIDLQAEGYWE
:. .: .::: :.:: ::: :..: : .:::::..:.: : :.:..:: ::::::
XP_005 DMFAWQIDFNGGDRWKVESLPGAHGTDFP-DPKVKKYFVTSYEMCLKSQLVDLVAEGYWE
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB6 ELLDTTQPAIVVKDWYSGRSDAGCLYELTVKLLSEHENVLAEFSSGQVAVPQDSDGGGWM
::::: .: ::::::...:.: :: :.: :.: : ::: : :.. :. ... :
XP_005 ELLDTFRPDIVVKDWFAARADCGCTYQLKVQLASADYFVLASFEPPPVTI-QQWNNATWT
160 170 180 190 200 210
260 270 280 290
pF1KB6 EISHTFTDYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP
:.:.::.:: :::.. :.:::.:. :: ::.: ::::::. : :
XP_005 EVSYTFSDYPRGVRYILFQHGGRDTQYWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQ
220 230 240 250 260 270
XP_005 KHGQEEAAQSPYRAVVQIF
280 290
>>XP_005263505 (OMIM: 605647) PREDICTED: F-box only prot (293 aa)
initn: 835 init1: 299 opt: 895 Z-score: 880.3 bits: 170.9 E(85289): 2.7e-42
Smith-Waterman score: 895; 50.2% identity (72.9% similar) in 255 aa overlap (42-296:8-259)
20 30 40 50 60 70
pF1KB6 QPEEASPEEQPEEASAEEERPEDQQEEEAAAAAAYLDELPEPLLLRVLAALPAAELVQAC
:: ..:::: .::.... .:: .:. :
XP_005 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNC
10 20 30
80 90 100 110 120 130
pF1KB6 RLVCLRWKELVDGAPLWLLKCQQEGLVPEGGVEEERDHWQQFYFLSKRRRNLLRNPCGEE
:::: :..:.: :: :: .::.. . . : :. :::: . .::::::::.::
XP_005 RLVCSLWRDLIDLMTLWKRKCLREGFITKDWDQPVAD-WKIFYFLRSLHRNLLRNPCAEE
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB6 DLEGWCDVEHGGDGWRVEELPGDSGVEFTHDESVKKYFASSFEWCRKAQVIDLQAEGYWE
:. .: .::: :.:: ::: :..: : .:::::..:.: : :.:..:: ::::::
XP_005 DMFAWQIDFNGGDRWKVESLPGAHGTDFP-DPKVKKYFVTSYEMCLKSQLVDLVAEGYWE
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB6 ELLDTTQPAIVVKDWYSGRSDAGCLYELTVKLLSEHENVLAEFSSGQVAVPQDSDGGGWM
::::: .: ::::::...:.: :: :.: :.: : ::: : :.. :. ... :
XP_005 ELLDTFRPDIVVKDWFAARADCGCTYQLKVQLASADYFVLASFEPPPVTI-QQWNNATWT
160 170 180 190 200 210
260 270 280 290
pF1KB6 EISHTFTDYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP
:.:.::.:: :::.. :.:::.:. :: ::.: ::::::. : :
XP_005 EVSYTFSDYPRGVRYILFQHGGRDTQYWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQ
220 230 240 250 260 270
XP_005 KHGQEEAAQSPYRAVVQIF
280 290
>>NP_060908 (OMIM: 605647) F-box only protein 6 [Homo sa (293 aa)
initn: 835 init1: 299 opt: 895 Z-score: 880.3 bits: 170.9 E(85289): 2.7e-42
Smith-Waterman score: 895; 50.2% identity (72.9% similar) in 255 aa overlap (42-296:8-259)
20 30 40 50 60 70
pF1KB6 QPEEASPEEQPEEASAEEERPEDQQEEEAAAAAAYLDELPEPLLLRVLAALPAAELVQAC
:: ..:::: .::.... .:: .:. :
NP_060 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNC
10 20 30
80 90 100 110 120 130
pF1KB6 RLVCLRWKELVDGAPLWLLKCQQEGLVPEGGVEEERDHWQQFYFLSKRRRNLLRNPCGEE
:::: :..:.: :: :: .::.. . . : :. :::: . .::::::::.::
NP_060 RLVCSLWRDLIDLMTLWKRKCLREGFITKDWDQPVAD-WKIFYFLRSLHRNLLRNPCAEE
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB6 DLEGWCDVEHGGDGWRVEELPGDSGVEFTHDESVKKYFASSFEWCRKAQVIDLQAEGYWE
:. .: .::: :.:: ::: :..: : .:::::..:.: : :.:..:: ::::::
NP_060 DMFAWQIDFNGGDRWKVESLPGAHGTDFP-DPKVKKYFVTSYEMCLKSQLVDLVAEGYWE
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB6 ELLDTTQPAIVVKDWYSGRSDAGCLYELTVKLLSEHENVLAEFSSGQVAVPQDSDGGGWM
::::: .: ::::::...:.: :: :.: :.: : ::: : :.. :. ... :
NP_060 ELLDTFRPDIVVKDWFAARADCGCTYQLKVQLASADYFVLASFEPPPVTI-QQWNNATWT
160 170 180 190 200 210
260 270 280 290
pF1KB6 EISHTFTDYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP
:.:.::.:: :::.. :.:::.:. :: ::.: ::::::. : :
NP_060 EVSYTFSDYPRGVRYILFQHGGRDTQYWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQ
220 230 240 250 260 270
NP_060 KHGQEEAAQSPYRAVVQIF
280 290
>>NP_001291720 (OMIM: 609111) F-box only protein 44 isof (255 aa)
initn: 672 init1: 298 opt: 867 Z-score: 854.0 bits: 165.8 E(85289): 7.9e-41
Smith-Waterman score: 867; 49.4% identity (73.7% similar) in 255 aa overlap (43-296:2-252)
20 30 40 50 60 70
pF1KB6 PEEASPEEQPEEASAEEERPEDQQEEEAAAAAAYLDELPEPLLLRVLAALPAAELVQACR
:.. ..:::: .::.... .:: .:. ::
NP_001 MAVGNINELPENILLELFTHVPARQLLLNCR
10 20 30
80 90 100 110 120 130
pF1KB6 LVCLRWKELVDGAPLWLLKCQQEGLVPEGGVEEERDHWQQFYFLSKRRRNLLRNPCGEED
::: :..:.: . :: :: .::.. : . : :. :::: . .::::.:::.::
NP_001 LVCSLWRDLIDLVTLWKRKCLREGFITEDWDQPVAD-WKIFYFLRSLHRNLLHNPCAEEG
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB6 LEGWC-DVEHGGDGWRVEELPGDSGVEFTHDESVKKYFASSFEWCRKAQVIDLQAEGYWE
.: : :: .::: :.::.: :. :: .:. :::::..:. : :.::.::.::::::
NP_001 FEFWSLDV-NGGDEWKVEDLSRDQRKEFPNDQ-VKKYFVTSYYTCLKSQVVDLKAEGYWE
100 110 120 130 140
200 210 220 230 240 250
pF1KB6 ELLDTTQPAIVVKDWYSGRSDAGCLYELTVKLLSEHENVLAEFSSGQVAVPQDSDGGGWM
::.:::.: : ::::...: : : :.: :.::: . :. :. ... : ::. :
NP_001 ELMDTTRPDIEVKDWFAARPDCGSKYQLCVQLLSSAHAPLGTFQPDPATIQQKSDAK-WR
150 160 170 180 190 200
260 270 280 290
pF1KB6 EISHTFTDYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP
:.::::..: ::::.. :.::: :. :: ::.: ::::::. . :
NP_001 EVSHTFSNYPPGVRYIWFQHGGVDTHYWAGWYGPRVTNSSITIGPPLP
210 220 230 240 250
>>XP_016858332 (OMIM: 609111) PREDICTED: F-box only prot (255 aa)
initn: 672 init1: 298 opt: 867 Z-score: 854.0 bits: 165.8 E(85289): 7.9e-41
Smith-Waterman score: 867; 49.4% identity (73.7% similar) in 255 aa overlap (43-296:2-252)
20 30 40 50 60 70
pF1KB6 PEEASPEEQPEEASAEEERPEDQQEEEAAAAAAYLDELPEPLLLRVLAALPAAELVQACR
:.. ..:::: .::.... .:: .:. ::
XP_016 MAVGNINELPENILLELFTHVPARQLLLNCR
10 20 30
80 90 100 110 120 130
pF1KB6 LVCLRWKELVDGAPLWLLKCQQEGLVPEGGVEEERDHWQQFYFLSKRRRNLLRNPCGEED
::: :..:.: . :: :: .::.. : . : :. :::: . .::::.:::.::
XP_016 LVCSLWRDLIDLVTLWKRKCLREGFITEDWDQPVAD-WKIFYFLRSLHRNLLHNPCAEEG
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB6 LEGWC-DVEHGGDGWRVEELPGDSGVEFTHDESVKKYFASSFEWCRKAQVIDLQAEGYWE
.: : :: .::: :.::.: :. :: .:. :::::..:. : :.::.::.::::::
XP_016 FEFWSLDV-NGGDEWKVEDLSRDQRKEFPNDQ-VKKYFVTSYYTCLKSQVVDLKAEGYWE
100 110 120 130 140
200 210 220 230 240 250
pF1KB6 ELLDTTQPAIVVKDWYSGRSDAGCLYELTVKLLSEHENVLAEFSSGQVAVPQDSDGGGWM
::.:::.: : ::::...: : : :.: :.::: . :. :. ... : ::. :
XP_016 ELMDTTRPDIEVKDWFAARPDCGSKYQLCVQLLSSAHAPLGTFQPDPATIQQKSDAK-WR
150 160 170 180 190 200
260 270 280 290
pF1KB6 EISHTFTDYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP
:.::::..: ::::.. :.::: :. :: ::.: ::::::. . :
XP_016 EVSHTFSNYPPGVRYIWFQHGGVDTHYWAGWYGPRVTNSSITIGPPLP
210 220 230 240 250
296 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 20:38:16 2016 done: Fri Nov 4 20:38:17 2016
Total Scan time: 7.780 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]