Result of FASTA (omim) for
pF1KB6366
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6366, 298 aa
1>>>pF1KB6366 298 - 298 aa - 298 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.4822+/-0.000448; mu= 19.8781+/- 0.028
mean_var=63.0414+/-13.542, 0's: 0 Z-trim(109.1): 266 B-trim: 738 in 1/52
Lambda= 0.161533
statistics sampled from 16964 (17270) to 16964 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.553), E-opt: 0.2 (0.202), width: 16
Scan time: 6.530
The best scores are: opt bits E(85289)
NP_001142 (OMIM: 103220,609283,615418) ADP/ATP tra ( 298) 2004 476.0 3.9e-134
NP_001143 (OMIM: 300150) ADP/ATP translocase 2 [Ho ( 298) 1817 432.4 5.1e-121
NP_001627 (OMIM: 300151,403000) ADP/ATP translocas ( 298) 1813 431.5 9.7e-121
NP_112581 (OMIM: 610796) ADP/ATP translocase 4 iso ( 315) 1456 348.3 1.1e-95
NP_001305396 (OMIM: 610796) ADP/ATP translocase 4 ( 272) 1249 300.0 3.3e-81
XP_011530600 (OMIM: 610796) PREDICTED: ADP/ATP tra ( 224) 659 162.5 7.1e-40
NP_848621 (OMIM: 610823) mitochondrial coenzyme A ( 318) 431 109.5 9.1e-24
NP_001308473 (OMIM: 610823) mitochondrial coenzyme ( 318) 431 109.5 9.1e-24
XP_011526239 (OMIM: 610823) PREDICTED: mitochondri ( 318) 431 109.5 9.1e-24
XP_005259918 (OMIM: 610823) PREDICTED: mitochondri ( 318) 431 109.5 9.1e-24
XP_016882159 (OMIM: 610823) PREDICTED: mitochondri ( 382) 431 109.5 1e-23
NP_689920 (OMIM: 139080) graves disease carrier pr ( 332) 393 100.6 4.3e-21
XP_011538513 (OMIM: 139080) PREDICTED: graves dise ( 332) 393 100.6 4.3e-21
NP_001311242 (OMIM: 139080) graves disease carrier ( 281) 390 99.9 6.2e-21
NP_001311241 (OMIM: 139080) graves disease carrier ( 315) 390 99.9 6.8e-21
NP_001010875 (OMIM: 610793) kidney mitochondrial c ( 291) 379 97.3 3.8e-20
XP_016876013 (OMIM: 610793) PREDICTED: kidney mito ( 291) 379 97.3 3.8e-20
NP_001269127 (OMIM: 300242) brain mitochondrial ca ( 290) 372 95.7 1.2e-19
NP_001269125 (OMIM: 300242) brain mitochondrial ca ( 322) 372 95.7 1.3e-19
NP_001269124 (OMIM: 300242) brain mitochondrial ca ( 325) 372 95.7 1.3e-19
XP_011529704 (OMIM: 300242) PREDICTED: brain mitoc ( 334) 372 95.7 1.3e-19
XP_016885425 (OMIM: 300242) PREDICTED: brain mitoc ( 306) 369 95.0 2e-19
XP_016885428 (OMIM: 300242) PREDICTED: brain mitoc ( 338) 369 95.0 2.1e-19
XP_016885427 (OMIM: 300242) PREDICTED: brain mitoc ( 341) 369 95.0 2.1e-19
XP_016885426 (OMIM: 300242) PREDICTED: brain mitoc ( 350) 369 95.0 2.2e-19
NP_660348 (OMIM: 300641) solute carrier family 25 ( 341) 367 94.6 2.9e-19
NP_110407 (OMIM: 610815,616839) mitochondrial fola ( 315) 355 91.7 1.9e-18
NP_003346 (OMIM: 601693,607447) mitochondrial unco ( 309) 322 84.0 3.9e-16
XP_005251746 (OMIM: 608745) PREDICTED: calcium-bin ( 366) 313 82.0 1.9e-15
XP_006717012 (OMIM: 608745) PREDICTED: calcium-bin ( 378) 313 82.0 1.9e-15
NP_443133 (OMIM: 608745) calcium-binding mitochond ( 469) 313 82.1 2.3e-15
XP_006717011 (OMIM: 608745) PREDICTED: calcium-bin ( 481) 313 82.1 2.3e-15
NP_001006643 (OMIM: 608745) calcium-binding mitoch ( 489) 313 82.1 2.3e-15
NP_001252543 (OMIM: 608745) calcium-binding mitoch ( 501) 313 82.1 2.4e-15
NP_001006642 (OMIM: 608745) calcium-binding mitoch ( 503) 313 82.1 2.4e-15
NP_001317917 (OMIM: 608745) calcium-binding mitoch ( 515) 313 82.2 2.4e-15
NP_001273735 (OMIM: 610793) kidney mitochondrial c ( 240) 300 78.8 1.1e-14
XP_011535590 (OMIM: 607571) PREDICTED: mitochondri ( 269) 286 75.6 1.2e-13
NP_001164641 (OMIM: 607571) mitochondrial 2-oxodic ( 298) 286 75.6 1.3e-13
NP_085134 (OMIM: 607571) mitochondrial 2-oxodicarb ( 299) 286 75.6 1.3e-13
XP_011535589 (OMIM: 607571) PREDICTED: mitochondri ( 303) 286 75.6 1.3e-13
NP_997231 (OMIM: 610817) solute carrier family 25 ( 304) 277 73.6 5.6e-13
XP_016884830 (OMIM: 300641) PREDICTED: solute carr ( 231) 272 72.3 1e-12
XP_016884829 (OMIM: 300641) PREDICTED: solute carr ( 258) 272 72.3 1.1e-12
XP_011533329 (OMIM: 610793) PREDICTED: kidney mito ( 216) 267 71.1 2.2e-12
NP_001273736 (OMIM: 610793) kidney mitochondrial c ( 216) 267 71.1 2.2e-12
XP_016856593 (OMIM: 608744) PREDICTED: calcium-bin ( 271) 263 70.2 4.9e-12
XP_016882776 (OMIM: 608746) PREDICTED: calcium-bin ( 485) 264 70.7 6.4e-12
XP_011526581 (OMIM: 608746) PREDICTED: calcium-bin ( 532) 264 70.7 6.8e-12
XP_016882780 (OMIM: 608746) PREDICTED: calcium-bin ( 376) 262 70.1 7.3e-12
>>NP_001142 (OMIM: 103220,609283,615418) ADP/ATP translo (298 aa)
initn: 2004 init1: 2004 opt: 2004 Z-score: 2529.2 bits: 476.0 E(85289): 3.9e-134
Smith-Waterman score: 2004; 100.0% identity (100.0% similar) in 298 aa overlap (1-298:1-298)
10 20 30 40 50 60
pF1KB6 MGDHAWSFLKDFLAGGVAAAVSKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGDHAWSFLKDFLAGGVAAAVSKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 IPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQLFLGGVDRHKQFWRYFAGNLASG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQLFLGGVDRHKQFWRYFAGNLASG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 GAAGATSLCFVYPLDFARTRLAADVGKGAAQREFHGLGDCIIKIFKSDGLRGLYQGFNVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GAAGATSLCFVYPLDFARTRLAADVGKGAAQREFHGLGDCIIKIFKSDGLRGLYQGFNVS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 VQGIIIYRAAYFGVYDTAKGMLPDPKNVHIFVSWMIAQSVTAVAGLVSYPFDTVRRRMMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VQGIIIYRAAYFGVYDTAKGMLPDPKNVHIFVSWMIAQSVTAVAGLVSYPFDTVRRRMMM
190 200 210 220 230 240
250 260 270 280 290
pF1KB6 QSGRKGADIMYTGTVDCWRKIAKDEGAKAFFKGAWSNVLRGMGGAFVLVLYDEIKKYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QSGRKGADIMYTGTVDCWRKIAKDEGAKAFFKGAWSNVLRGMGGAFVLVLYDEIKKYV
250 260 270 280 290
>>NP_001143 (OMIM: 300150) ADP/ATP translocase 2 [Homo s (298 aa)
initn: 1817 init1: 1817 opt: 1817 Z-score: 2293.7 bits: 432.4 E(85289): 5.1e-121
Smith-Waterman score: 1817; 89.2% identity (97.3% similar) in 297 aa overlap (1-297:1-297)
10 20 30 40 50 60
pF1KB6 MGDHAWSFLKDFLAGGVAAAVSKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVR
: : : :: :::::::::::.::::::::::::::::::::::::.:.::::::::::::
NP_001 MTDAAVSFAKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQITADKQYKGIIDCVVR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 IPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQLFLGGVDRHKQFWRYFAGNLASG
:::::: ::::::::::::::::::::::::::::::.::::::.. ::: :::::::::
NP_001 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKRTQFWLYFAGNLASG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 GAAGATSLCFVYPLDFARTRLAADVGKGAAQREFHGLGDCIIKIFKSDGLRGLYQGFNVS
:::::::::::::::::::::::::::..:.:::.:::::..::.::::..:::::::::
NP_001 GAAGATSLCFVYPLDFARTRLAADVGKAGAEREFRGLGDCLVKIYKSDGIKGLYQGFNVS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 VQGIIIYRAAYFGVYDTAKGMLPDPKNVHIFVSWMIAQSVTAVAGLVSYPFDTVRRRMMM
:::::::::::::.:::::::::::::.:: .::::::.:::::::.:::::::::::::
NP_001 VQGIIIYRAAYFGIYDTAKGMLPDPKNTHIVISWMIAQTVTAVAGLTSYPFDTVRRRMMM
190 200 210 220 230 240
250 260 270 280 290
pF1KB6 QSGRKGADIMYTGTVDCWRKIAKDEGAKAFFKGAWSNVLRGMGGAFVLVLYDEIKKYV
::::::.:::::::.:::::::.:::.::::::::::::::::::::::::::::::
NP_001 QSGRKGTDIMYTGTLDCWRKIARDEGGKAFFKGAWSNVLRGMGGAFVLVLYDEIKKYT
250 260 270 280 290
>>NP_001627 (OMIM: 300151,403000) ADP/ATP translocase 3 (298 aa)
initn: 1975 init1: 1803 opt: 1813 Z-score: 2288.7 bits: 431.5 E(85289): 9.7e-121
Smith-Waterman score: 1813; 88.3% identity (97.0% similar) in 298 aa overlap (1-298:1-298)
10 20 30 40 50 60
pF1KB6 MGDHAWSFLKDFLAGGVAAAVSKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVR
: ..: :: :::::::.:::.::::::::::::::::::::::::.:.::::::.::.::
NP_001 MTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 IPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQLFLGGVDRHKQFWRYFAGNLASG
:::::: ::::::::::::::::::::::::::::::.::::::.: :::::::::::::
NP_001 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFAGNLASG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 GAAGATSLCFVYPLDFARTRLAADVGKGAAQREFHGLGDCIIKIFKSDGLRGLYQGFNVS
:::::::::::::::::::::::::::....:::.:::::..:: ::::.:::::::.::
NP_001 GAAGATSLCFVYPLDFARTRLAADVGKSGTEREFRGLGDCLVKITKSDGIRGLYQGFSVS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 VQGIIIYRAAYFGVYDTAKGMLPDPKNVHIFVSWMIAQSVTAVAGLVSYPFDTVRRRMMM
:::::::::::::::::::::::::::.:: :::::::.::::::.::::::::::::::
NP_001 VQGIIIYRAAYFGVYDTAKGMLPDPKNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMM
190 200 210 220 230 240
250 260 270 280 290
pF1KB6 QSGRKGADIMYTGTVDCWRKIAKDEGAKAFFKGAWSNVLRGMGGAFVLVLYDEIKKYV
::::::::::::::::::::: .:::.::::::::::::::::::::::::::.:: .
NP_001 QSGRKGADIMYTGTVDCWRKIFRDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKKVI
250 260 270 280 290
>>NP_112581 (OMIM: 610796) ADP/ATP translocase 4 isoform (315 aa)
initn: 1449 init1: 1262 opt: 1456 Z-score: 1838.7 bits: 348.3 E(85289): 1.1e-95
Smith-Waterman score: 1456; 73.7% identity (91.5% similar) in 293 aa overlap (5-297:17-307)
10 20 30 40
pF1KB6 MGDHAWSFLKDFLAGGVAAAVSKTAVAPIERVKLLLQVQHASKQISAE
: :: ::.::::::::::::::::::::::::::: .::::: :
NP_112 MHREPAKKKAEKRLFDASSFGKDLLAGGVAAAVSKTAVAPIERVKLLLQVQASSKQISPE
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB6 KQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQLFLGGVDRHKQ
.:::..::.::::.::::.:::::::::::::::::::::::::::::::..::...::
NP_112 ARYKGMVDCLVRIPREQGFFSFWRGNLANVIRYFPTQALNFAFKDKYKQLFMSGVNKEKQ
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB6 FWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFHGLGDCIIKIFKSD
:::.: .:::::::::::::: :::::::::::..:.::: .:.:.::::::.:: :::
NP_112 FWRWFLANLASGGAAGATSLCVVYPLDFARTRLGVDIGKGPEERQFKGLGDCIMKIAKSD
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB6 GLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIFVSWMIAQSVTAVAGLVS
:. ::::::.:::::::.:::.:::.:::.::.:: ::.. ..::..::: ::. .:..:
NP_112 GIAGLYQGFGVSVQGIIVYRASYFGAYDTVKGLLPKPKKTPFLVSFFIAQVVTTCSGILS
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB6 YPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGAKAFFKGAWSNVLRGMGGAFVL
:::::::::::::::. : .: ::.::. :: . :: ..::.::.:::::: :::.::
NP_112 YPFDTVRRRMMMQSGE--AKRQYKGTLDCFVKIYQHEGISSFFRGAFSNVLRGTGGALVL
250 260 270 280 290
290
pF1KB6 VLYDEIKKYV
::::.::..
NP_112 VLYDKIKEFFHIDIGGR
300 310
>>NP_001305396 (OMIM: 610796) ADP/ATP translocase 4 isof (272 aa)
initn: 1249 init1: 1249 opt: 1249 Z-score: 1578.8 bits: 300.0 E(85289): 3.3e-81
Smith-Waterman score: 1249; 77.2% identity (93.7% similar) in 237 aa overlap (5-241:17-253)
10 20 30 40
pF1KB6 MGDHAWSFLKDFLAGGVAAAVSKTAVAPIERVKLLLQVQHASKQISAE
: :: ::.::::::::::::::::::::::::::: .::::: :
NP_001 MHREPAKKKAEKRLFDASSFGKDLLAGGVAAAVSKTAVAPIERVKLLLQVQASSKQISPE
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB6 KQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQLFLGGVDRHKQ
.:::..::.::::.::::.:::::::::::::::::::::::::::::::..::...::
NP_001 ARYKGMVDCLVRIPREQGFFSFWRGNLANVIRYFPTQALNFAFKDKYKQLFMSGVNKEKQ
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB6 FWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFHGLGDCIIKIFKSD
:::.: .:::::::::::::: :::::::::::..:.::: .:.:.::::::.:: :::
NP_001 FWRWFLANLASGGAAGATSLCVVYPLDFARTRLGVDIGKGPEERQFKGLGDCIMKIAKSD
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB6 GLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIFVSWMIAQSVTAVAGLVS
:. ::::::.:::::::.:::.:::.:::.::.:: ::.. ..::..::: ::. .:..:
NP_001 GIAGLYQGFGVSVQGIIVYRASYFGAYDTVKGLLPKPKKTPFLVSFFIAQVVTTCSGILS
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB6 YPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGAKAFFKGAWSNVLRGMGGAFVL
:::::::::::::
NP_001 YPFDTVRRRMMMQVINFLINYNSKLHLKNLEW
250 260 270
>>XP_011530600 (OMIM: 610796) PREDICTED: ADP/ATP translo (224 aa)
initn: 809 init1: 570 opt: 659 Z-score: 836.9 bits: 162.5 E(85289): 7.1e-40
Smith-Waterman score: 770; 49.8% identity (62.5% similar) in 293 aa overlap (5-297:17-216)
10 20 30 40
pF1KB6 MGDHAWSFLKDFLAGGVAAAVSKTAVAPIERVKLLLQVQHASKQISAE
: :: ::.::::::::::::::::::::::::::: .::::: :
XP_011 MHREPAKKKAEKRLFDASSFGKDLLAGGVAAAVSKTAVAPIERVKLLLQVQASSKQISPE
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB6 KQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQLFLGGVDRHKQ
.:::..::.::::.::::.:::::::::::::::::::::::::::::::..::...::
XP_011 ARYKGMVDCLVRIPREQGFFSFWRGNLANVIRYFPTQALNFAFKDKYKQLFMSGVNKEKQ
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB6 FWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFHGLGDCIIKIFKSD
XP_011 ------------------------------------------------------------
170 180 190 200 210 220
pF1KB6 GLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIFVSWMIAQSVTAVAGLVS
:.:: ::.. ..::..::: ::. .:..:
XP_011 -------------------------------GLLPKPKKTPFLVSFFIAQVVTTCSGILS
130 140
230 240 250 260 270 280
pF1KB6 YPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGAKAFFKGAWSNVLRGMGGAFVL
:::::::::::::::. : .: ::.::. :: . :: ..::.::.:::::: :::.::
XP_011 YPFDTVRRRMMMQSGE--AKRQYKGTLDCFVKIYQHEGISSFFRGAFSNVLRGTGGALVL
150 160 170 180 190 200
290
pF1KB6 VLYDEIKKYV
::::.::..
XP_011 VLYDKIKEFFHIDIGGR
210 220
>>NP_848621 (OMIM: 610823) mitochondrial coenzyme A tran (318 aa)
initn: 392 init1: 117 opt: 431 Z-score: 547.7 bits: 109.5 E(85289): 9.1e-24
Smith-Waterman score: 431; 32.9% identity (63.7% similar) in 289 aa overlap (3-281:29-295)
10 20 30
pF1KB6 MGDHAWSFLKDFLAGGVAAAVSKTAVAPIERVKL
:: . :...:.:..:.:..::::::..:.:.
NP_848 MGNGVKEGPVRLHEDAEAVLSSSVSSKRDHR-QVLSSLLSGALAGALAKTAVAPLDRTKI
10 20 30 40 50
40 50 60 70 80 90
pF1KB6 LLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDK
..:: .::..::.. .. . . ..::::.:::: :...: : :..:. ...
NP_848 IFQV--SSKRFSAKEAFRVLYYTYL----NEGFLSLWRGNSATMVRVVPYAAIQFSAHEE
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB6 YKQL---FLGGVDRHKQFW-RYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAA
::.. . : . : : ::: :: :.:. ..::::..:.:.:. . :
NP_848 YKRILGSYYGFRGEALPPWPRLFAGALA-----GTTAASLTYPLDLVRARMAV-TPKEMY
120 130 140 150 160
160 170 180 190 200
pF1KB6 QREFHGLGDCIIKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGM---LPDPKN
. :: .:.: . .::. ::.:: .: :.: : . : .:.: :.. ..
NP_848 SNIFH----VFIRISREEGLKTLYHGFMPTVLGVIPYAGLSFFTYETLKSLHREYSGRRQ
170 180 190 200 210 220
210 220 230 240 250 260
pF1KB6 VHIFVSWMIAQSVTAVAGLVSYPFDTVRRRMMMQ--SGRKGADIMYTGTVDCWRKIAKDE
. : ... . .. .:::.:.:::::. .: :.: : : :...:
NP_848 PYPFERMIFGACAGLIGQSASYPLDVVRRRMQTAGVTGYPRASIART-----LRTIVREE
230 240 250 260 270
270 280 290
pF1KB6 GA-KAFFKGAWSNVLRGMGGAFVLVLYDEIKKYV
:: ....:: : ..:
NP_848 GAVRGLYKGLSMNWVKGPIAVGISFTTFDLMQILLRHLQS
280 290 300 310
>>NP_001308473 (OMIM: 610823) mitochondrial coenzyme A t (318 aa)
initn: 392 init1: 117 opt: 431 Z-score: 547.7 bits: 109.5 E(85289): 9.1e-24
Smith-Waterman score: 431; 32.9% identity (63.7% similar) in 289 aa overlap (3-281:29-295)
10 20 30
pF1KB6 MGDHAWSFLKDFLAGGVAAAVSKTAVAPIERVKL
:: . :...:.:..:.:..::::::..:.:.
NP_001 MGNGVKEGPVRLHEDAEAVLSSSVSSKRDHR-QVLSSLLSGALAGALAKTAVAPLDRTKI
10 20 30 40 50
40 50 60 70 80 90
pF1KB6 LLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDK
..:: .::..::.. .. . . ..::::.:::: :...: : :..:. ...
NP_001 IFQV--SSKRFSAKEAFRVLYYTYL----NEGFLSLWRGNSATMVRVVPYAAIQFSAHEE
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB6 YKQL---FLGGVDRHKQFW-RYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAA
::.. . : . : : ::: :: :.:. ..::::..:.:.:. . :
NP_001 YKRILGSYYGFRGEALPPWPRLFAGALA-----GTTAASLTYPLDLVRARMAV-TPKEMY
120 130 140 150 160
160 170 180 190 200
pF1KB6 QREFHGLGDCIIKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGM---LPDPKN
. :: .:.: . .::. ::.:: .: :.: : . : .:.: :.. ..
NP_001 SNIFH----VFIRISREEGLKTLYHGFMPTVLGVIPYAGLSFFTYETLKSLHREYSGRRQ
170 180 190 200 210 220
210 220 230 240 250 260
pF1KB6 VHIFVSWMIAQSVTAVAGLVSYPFDTVRRRMMMQ--SGRKGADIMYTGTVDCWRKIAKDE
. : ... . .. .:::.:.:::::. .: :.: : : :...:
NP_001 PYPFERMIFGACAGLIGQSASYPLDVVRRRMQTAGVTGYPRASIART-----LRTIVREE
230 240 250 260 270
270 280 290
pF1KB6 GA-KAFFKGAWSNVLRGMGGAFVLVLYDEIKKYV
:: ....:: : ..:
NP_001 GAVRGLYKGLSMNWVKGPIAVGISFTTFDLMQILLRHLQS
280 290 300 310
>>XP_011526239 (OMIM: 610823) PREDICTED: mitochondrial c (318 aa)
initn: 392 init1: 117 opt: 431 Z-score: 547.7 bits: 109.5 E(85289): 9.1e-24
Smith-Waterman score: 431; 32.9% identity (63.7% similar) in 289 aa overlap (3-281:29-295)
10 20 30
pF1KB6 MGDHAWSFLKDFLAGGVAAAVSKTAVAPIERVKL
:: . :...:.:..:.:..::::::..:.:.
XP_011 MGNGVKEGPVRLHEDAEAVLSSSVSSKRDHR-QVLSSLLSGALAGALAKTAVAPLDRTKI
10 20 30 40 50
40 50 60 70 80 90
pF1KB6 LLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDK
..:: .::..::.. .. . . ..::::.:::: :...: : :..:. ...
XP_011 IFQV--SSKRFSAKEAFRVLYYTYL----NEGFLSLWRGNSATMVRVVPYAAIQFSAHEE
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB6 YKQL---FLGGVDRHKQFW-RYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAA
::.. . : . : : ::: :: :.:. ..::::..:.:.:. . :
XP_011 YKRILGSYYGFRGEALPPWPRLFAGALA-----GTTAASLTYPLDLVRARMAV-TPKEMY
120 130 140 150 160
160 170 180 190 200
pF1KB6 QREFHGLGDCIIKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGM---LPDPKN
. :: .:.: . .::. ::.:: .: :.: : . : .:.: :.. ..
XP_011 SNIFH----VFIRISREEGLKTLYHGFMPTVLGVIPYAGLSFFTYETLKSLHREYSGRRQ
170 180 190 200 210 220
210 220 230 240 250 260
pF1KB6 VHIFVSWMIAQSVTAVAGLVSYPFDTVRRRMMMQ--SGRKGADIMYTGTVDCWRKIAKDE
. : ... . .. .:::.:.:::::. .: :.: : : :...:
XP_011 PYPFERMIFGACAGLIGQSASYPLDVVRRRMQTAGVTGYPRASIART-----LRTIVREE
230 240 250 260 270
270 280 290
pF1KB6 GA-KAFFKGAWSNVLRGMGGAFVLVLYDEIKKYV
:: ....:: : ..:
XP_011 GAVRGLYKGLSMNWVKGPIAVGISFTTFDLMQILLRHLQS
280 290 300 310
>>XP_005259918 (OMIM: 610823) PREDICTED: mitochondrial c (318 aa)
initn: 392 init1: 117 opt: 431 Z-score: 547.7 bits: 109.5 E(85289): 9.1e-24
Smith-Waterman score: 431; 32.9% identity (63.7% similar) in 289 aa overlap (3-281:29-295)
10 20 30
pF1KB6 MGDHAWSFLKDFLAGGVAAAVSKTAVAPIERVKL
:: . :...:.:..:.:..::::::..:.:.
XP_005 MGNGVKEGPVRLHEDAEAVLSSSVSSKRDHR-QVLSSLLSGALAGALAKTAVAPLDRTKI
10 20 30 40 50
40 50 60 70 80 90
pF1KB6 LLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDK
..:: .::..::.. .. . . ..::::.:::: :...: : :..:. ...
XP_005 IFQV--SSKRFSAKEAFRVLYYTYL----NEGFLSLWRGNSATMVRVVPYAAIQFSAHEE
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB6 YKQL---FLGGVDRHKQFW-RYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAA
::.. . : . : : ::: :: :.:. ..::::..:.:.:. . :
XP_005 YKRILGSYYGFRGEALPPWPRLFAGALA-----GTTAASLTYPLDLVRARMAV-TPKEMY
120 130 140 150 160
160 170 180 190 200
pF1KB6 QREFHGLGDCIIKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGM---LPDPKN
. :: .:.: . .::. ::.:: .: :.: : . : .:.: :.. ..
XP_005 SNIFH----VFIRISREEGLKTLYHGFMPTVLGVIPYAGLSFFTYETLKSLHREYSGRRQ
170 180 190 200 210 220
210 220 230 240 250 260
pF1KB6 VHIFVSWMIAQSVTAVAGLVSYPFDTVRRRMMMQ--SGRKGADIMYTGTVDCWRKIAKDE
. : ... . .. .:::.:.:::::. .: :.: : : :...:
XP_005 PYPFERMIFGACAGLIGQSASYPLDVVRRRMQTAGVTGYPRASIART-----LRTIVREE
230 240 250 260 270
270 280 290
pF1KB6 GA-KAFFKGAWSNVLRGMGGAFVLVLYDEIKKYV
:: ....:: : ..:
XP_005 GAVRGLYKGLSMNWVKGPIAVGISFTTFDLMQILLRHLQS
280 290 300 310
298 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 22:47:59 2016 done: Fri Nov 4 22:48:00 2016
Total Scan time: 6.530 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]