FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6369, 269 aa
  1>>>pF1KB6369 269 - 269 aa - 269 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0622+/-0.00103; mu= 2.2562+/- 0.061
 mean_var=152.5375+/-30.593, 0's: 0 Z-trim(109.2): 13  B-trim: 72 in 1/51
 Lambda= 0.103845
 statistics sampled from 10702 (10709) to 10702 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.329), width:  16
 Scan time:  2.270

The best scores are:                                      opt bits E(32554)
CCDS3984.1 CENPK gene_id:64105|Hs108|chr5          ( 269) 1746 273.1 1.5e-73


>>CCDS3984.1 CENPK gene_id:64105|Hs108|chr5               (269 aa)
 initn: 1746 init1: 1746 opt: 1746  Z-score: 1434.0  bits: 273.1 E(32554): 1.5e-73
Smith-Waterman score: 1746; 100.0% identity (100.0% similar) in 269 aa overlap (1-269:1-269)

               10        20        30        40        50        60
pF1KB6 MNQEDLDPDSTTDVGDVTNTEEELIRECEEMWKDMEECQNKLSLIGTETLTDSNAQLSLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 MNQEDLDPDSTTDVGDVTNTEEELIRECEEMWKDMEECQNKLSLIGTETLTDSNAQLSLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 IMQVKCLTAELSQWQKKTPETIPLTEDVLITLGKEEFQKLRQDLEMVLSTKESKNEKLKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 IMQVKCLTAELSQWQKKTPETIPLTEDVLITLGKEEFQKLRQDLEMVLSTKESKNEKLKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 DLEREQRWLDEQQQIMESLNVLHSELKNKVETFSESRIFNELKTKMLNIKEYKEKLLSTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 DLEREQRWLDEQQQIMESLNVLHSELKNKVETFSESRIFNELKTKMLNIKEYKEKLLSTL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 GEFLEDHFPLPDRSVKKKKKNIQESSVNLITLHEMLEILINRLFDVPHDPYVKISDSFWP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 GEFLEDHFPLPDRSVKKKKKNIQESSVNLITLHEMLEILINRLFDVPHDPYVKISDSFWP
              190       200       210       220       230       240

              250       260         
pF1KB6 PYVELLLRNGIALRHPEDPTRIRLEAFHQ
       :::::::::::::::::::::::::::::
CCDS39 PYVELLLRNGIALRHPEDPTRIRLEAFHQ
              250       260         




269 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 08:12:46 2016 done: Sat Nov  5 08:12:46 2016
 Total Scan time:  2.270 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]