Result of FASTA (ccds) for
pF1KB6384
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6384, 300 aa
1>>>pF1KB6384 300 - 300 aa - 300 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7804+/-0.000715; mu= 9.8283+/- 0.044
mean_var=103.6797+/-20.860, 0's: 0 Z-trim(112.1): 10 B-trim: 0 in 0/53
Lambda= 0.125958
statistics sampled from 12924 (12933) to 12924 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.397), width: 16
Scan time: 2.760
The best scores are: opt bits E(32554)
CCDS32817.1 TPGS2 gene_id:25941|Hs108|chr18 ( 300) 2024 377.6 6.2e-105
CCDS82248.1 TPGS2 gene_id:25941|Hs108|chr18 ( 248) 1490 280.5 8.6e-76
CCDS62423.1 TPGS2 gene_id:25941|Hs108|chr18 ( 227) 1485 279.6 1.5e-75
CCDS74215.1 TPGS2 gene_id:25941|Hs108|chr18 ( 232) 1485 279.6 1.5e-75
CCDS62424.1 TPGS2 gene_id:25941|Hs108|chr18 ( 304) 1486 279.8 1.7e-75
CCDS62422.1 TPGS2 gene_id:25941|Hs108|chr18 ( 265) 1241 235.3 3.8e-62
CCDS62421.1 TPGS2 gene_id:25941|Hs108|chr18 ( 257) 1184 224.9 4.9e-59
CCDS74214.1 TPGS2 gene_id:25941|Hs108|chr18 ( 130) 842 162.6 1.4e-40
>>CCDS32817.1 TPGS2 gene_id:25941|Hs108|chr18 (300 aa)
initn: 2024 init1: 2024 opt: 2024 Z-score: 1997.3 bits: 377.6 E(32554): 6.2e-105
Smith-Waterman score: 2024; 100.0% identity (100.0% similar) in 300 aa overlap (1-300:1-300)
10 20 30 40 50 60
pF1KB6 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKQWFSMYKPITYNTNLLTEETD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKQWFSMYKPITYNTNLLTEETD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 SFVNKLDPSKVFKSKNKIVIPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNPTRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SFVNKLDPSKVFKSKNKIVIPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNPTRK
250 260 270 280 290 300
>>CCDS82248.1 TPGS2 gene_id:25941|Hs108|chr18 (248 aa)
initn: 1490 init1: 1490 opt: 1490 Z-score: 1474.2 bits: 280.5 E(32554): 8.6e-76
Smith-Waterman score: 1490; 97.3% identity (99.1% similar) in 225 aa overlap (1-225:1-225)
10 20 30 40 50 60
pF1KB6 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKQWFSMYKPITYNTNLLTEETD
::::::::::::::::::::::::::::::::::::::: ....
CCDS82 YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKALLGLFDGSSPPVDLNNPRGR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 SFVNKLDPSKVFKSKNKIVIPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNPTRK
CCDS82 TGIRSRRF
>>CCDS62423.1 TPGS2 gene_id:25941|Hs108|chr18 (227 aa)
initn: 1485 init1: 1485 opt: 1485 Z-score: 1469.8 bits: 279.6 E(32554): 1.5e-75
Smith-Waterman score: 1485; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:1-219)
10 20 30 40 50 60
pF1KB6 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKQWFSMYKPITYNTNLLTEETD
:::::::::::::::::::::::::::::::::::::::
CCDS62 YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKVREEHLPL
190 200 210 220
250 260 270 280 290 300
pF1KB6 SFVNKLDPSKVFKSKNKIVIPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNPTRK
>>CCDS74215.1 TPGS2 gene_id:25941|Hs108|chr18 (232 aa)
initn: 1485 init1: 1485 opt: 1485 Z-score: 1469.7 bits: 279.6 E(32554): 1.5e-75
Smith-Waterman score: 1485; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:1-219)
10 20 30 40 50 60
pF1KB6 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKQWFSMYKPITYNTNLLTEETD
:::::::::::::::::::::::::::::::::::::::
CCDS74 YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKPKGSEGRSKRGCF
190 200 210 220 230
250 260 270 280 290 300
pF1KB6 SFVNKLDPSKVFKSKNKIVIPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNPTRK
>>CCDS62424.1 TPGS2 gene_id:25941|Hs108|chr18 (304 aa)
initn: 1485 init1: 1485 opt: 1486 Z-score: 1468.9 bits: 279.8 E(32554): 1.7e-75
Smith-Waterman score: 1486; 97.8% identity (99.1% similar) in 224 aa overlap (1-224:1-224)
10 20 30 40 50 60
pF1KB6 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKQWFSMYKPITYNTNLLTEETD
::::::::::::::::::::::::::::::::::::::: ...
CCDS62 YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKITYNIKMNRRKCVHWKLAVEP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 SFVNKLDPSKVFKSKNKIVIPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNPTRK
CCDS62 LQWELRSCVSAGMGTGHKQRVSSMKPRSCSVCSRRQSNSMGTTVSQSFLSYGKNVLFFTV
250 260 270 280 290 300
>>CCDS62422.1 TPGS2 gene_id:25941|Hs108|chr18 (265 aa)
initn: 1241 init1: 1241 opt: 1241 Z-score: 1229.2 bits: 235.3 E(32554): 3.8e-62
Smith-Waterman score: 1729; 88.3% identity (88.3% similar) in 300 aa overlap (1-300:1-265)
10 20 30 40 50 60
pF1KB6 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD
:::::::::::::::::::::::: :
CCDS62 MPEDVKNFYLMTNGFHMTWSVKLD-----------------------------------D
70 80
130 140 150 160 170 180
pF1KB6 LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
90 100 110 120 130 140
190 200 210 220 230 240
pF1KB6 YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKQWFSMYKPITYNTNLLTEETD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKQWFSMYKPITYNTNLLTEETD
150 160 170 180 190 200
250 260 270 280 290 300
pF1KB6 SFVNKLDPSKVFKSKNKIVIPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNPTRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 SFVNKLDPSKVFKSKNKIVIPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNPTRK
210 220 230 240 250 260
>>CCDS62421.1 TPGS2 gene_id:25941|Hs108|chr18 (257 aa)
initn: 1184 init1: 1184 opt: 1184 Z-score: 1173.4 bits: 224.9 E(32554): 4.9e-59
Smith-Waterman score: 1657; 85.7% identity (85.7% similar) in 300 aa overlap (1-300:1-257)
10 20 30 40 50 60
pF1KB6 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD
::::::::::::::::::::::::
CCDS62 MPEDVKNFYLMTNGFHMTWSVKLD------------------------------------
70 80
130 140 150 160 170 180
pF1KB6 LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 -------ASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
90 100 110 120 130
190 200 210 220 230 240
pF1KB6 YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKQWFSMYKPITYNTNLLTEETD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKQWFSMYKPITYNTNLLTEETD
140 150 160 170 180 190
250 260 270 280 290 300
pF1KB6 SFVNKLDPSKVFKSKNKIVIPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNPTRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 SFVNKLDPSKVFKSKNKIVIPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNPTRK
200 210 220 230 240 250
>>CCDS74214.1 TPGS2 gene_id:25941|Hs108|chr18 (130 aa)
initn: 842 init1: 842 opt: 842 Z-score: 842.1 bits: 162.6 E(32554): 1.4e-40
Smith-Waterman score: 842; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127)
10 20 30 40 50 60
pF1KB6 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
:::::::
CCDS74 LEDDTHEDNL
130
300 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 20:44:31 2016 done: Fri Nov 4 20:44:32 2016
Total Scan time: 2.760 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]