FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6386, 301 aa
  1>>>pF1KB6386 301 - 301 aa - 301 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3121+/-0.000711; mu= 15.4885+/- 0.043
 mean_var=64.8457+/-13.072, 0's: 0 Z-trim(109.3): 9  B-trim: 0 in 0/50
 Lambda= 0.159270
 statistics sampled from 10763 (10769) to 10763 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.331), width:  16
 Scan time:  2.320

The best scores are:                                      opt bits E(32554)
CCDS8955.3 METTL1 gene_id:4234|Hs108|chr12         ( 276) 1893 443.3 9.5e-125
CCDS8956.1 METTL1 gene_id:4234|Hs108|chr12         ( 155)  642 155.7   2e-38


>>CCDS8955.3 METTL1 gene_id:4234|Hs108|chr12              (276 aa)
 initn: 1893 init1: 1893 opt: 1893  Z-score: 2353.1  bits: 443.3 E(32554): 9.5e-125
Smith-Waterman score: 1893; 100.0% identity (100.0% similar) in 276 aa overlap (26-301:1-276)

               10        20        30        40        50        60
pF1KB6 MAASLTCASGLRLHVDLVEKPRTGIMAAETRNVAGAEAPPPQKRYYRQRAHSNPMADHTL
                                :::::::::::::::::::::::::::::::::::
CCDS89                          MAAETRNVAGAEAPPPQKRYYRQRAHSNPMADHTL
                                        10        20        30     

               70        80        90       100       110       120
pF1KB6 RYPVKPEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 RYPVKPEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELS
          40        50        60        70        80        90     

              130       140       150       160       170       180
pF1KB6 PLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 PLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT
         100       110       120       130       140       150     

              190       200       210       220       230       240
pF1KB6 KMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 KMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHP
         160       170       180       190       200       210     

              250       260       270       280       290       300
pF1KB6 LFERVPLEDLSEDPVVGHLGTSTEEGKKVLRNGGKNFPAIFRRIQDPVLQAVTSQTSLPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 LFERVPLEDLSEDPVVGHLGTSTEEGKKVLRNGGKNFPAIFRRIQDPVLQAVTSQTSLPG
         220       230       240       250       260       270     

        
pF1KB6 H
       :
CCDS89 H
        

>>CCDS8956.1 METTL1 gene_id:4234|Hs108|chr12              (155 aa)
 initn: 642 init1: 642 opt: 642  Z-score: 803.4  bits: 155.7 E(32554): 2e-38
Smith-Waterman score: 642; 97.8% identity (100.0% similar) in 93 aa overlap (26-118:1-93)

               10        20        30        40        50        60
pF1KB6 MAASLTCASGLRLHVDLVEKPRTGIMAAETRNVAGAEAPPPQKRYYRQRAHSNPMADHTL
                                :::::::::::::::::::::::::::::::::::
CCDS89                          MAAETRNVAGAEAPPPQKRYYRQRAHSNPMADHTL
                                        10        20        30     

               70        80        90       100       110       120
pF1KB6 RYPVKPEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::..  
CCDS89 RYPVKPEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLADKD
          40        50        60        70        80        90     

              130       140       150       160       170       180
pF1KB6 PLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT
                                                                   
CCDS89 VLPLPRPTFQADKAQVANHQSHPASRICLRAKSWGAGVYHNRCAGATRLDVHSFRRAPTV
         100       110       120       130       140       150     




301 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:45:43 2016 done: Fri Nov  4 20:45:43 2016
 Total Scan time:  2.320 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]