FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6386, 301 aa
  1>>>pF1KB6386 301 - 301 aa - 301 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0956+/-0.000317; mu= 16.8302+/- 0.020
 mean_var=65.8791+/-13.417, 0's: 0 Z-trim(116.4): 9  B-trim: 27 in 1/51
 Lambda= 0.158016
 statistics sampled from 27502 (27511) to 27502 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.323), width:  16
 Scan time:  6.480

The best scores are:                                      opt bits E(85289)
NP_005362 (OMIM: 604466) tRNA (guanine-N(7)-)-meth ( 276) 1893 440.0 2.5e-123
XP_005268930 (OMIM: 604466) PREDICTED: tRNA (guani ( 233) 1595 372.0 6.2e-103
XP_016874794 (OMIM: 604466) PREDICTED: tRNA (guani ( 219) 1473 344.2 1.4e-94
NP_075422 (OMIM: 604466) tRNA (guanine-N(7)-)-meth ( 155)  642 154.6 1.1e-37


>>NP_005362 (OMIM: 604466) tRNA (guanine-N(7)-)-methyltr  (276 aa)
 initn: 1893 init1: 1893 opt: 1893  Z-score: 2335.1  bits: 440.0 E(85289): 2.5e-123
Smith-Waterman score: 1893; 100.0% identity (100.0% similar) in 276 aa overlap (26-301:1-276)

               10        20        30        40        50        60
pF1KB6 MAASLTCASGLRLHVDLVEKPRTGIMAAETRNVAGAEAPPPQKRYYRQRAHSNPMADHTL
                                :::::::::::::::::::::::::::::::::::
NP_005                          MAAETRNVAGAEAPPPQKRYYRQRAHSNPMADHTL
                                        10        20        30     

               70        80        90       100       110       120
pF1KB6 RYPVKPEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RYPVKPEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELS
          40        50        60        70        80        90     

              130       140       150       160       170       180
pF1KB6 PLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT
         100       110       120       130       140       150     

              190       200       210       220       230       240
pF1KB6 KMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 KMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHP
         160       170       180       190       200       210     

              250       260       270       280       290       300
pF1KB6 LFERVPLEDLSEDPVVGHLGTSTEEGKKVLRNGGKNFPAIFRRIQDPVLQAVTSQTSLPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LFERVPLEDLSEDPVVGHLGTSTEEGKKVLRNGGKNFPAIFRRIQDPVLQAVTSQTSLPG
         220       230       240       250       260       270     

        
pF1KB6 H
       :
NP_005 H
        

>>XP_005268930 (OMIM: 604466) PREDICTED: tRNA (guanine-N  (233 aa)
 initn: 1595 init1: 1595 opt: 1595  Z-score: 1969.0  bits: 372.0 E(85289): 6.2e-103
Smith-Waterman score: 1595; 100.0% identity (100.0% similar) in 233 aa overlap (69-301:1-233)

       40        50        60        70        80        90        
pF1KB6 PPPQKRYYRQRAHSNPMADHTLRYPVKPEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKR
                                     ::::::::::::::::::::::::::::::
XP_005                               MDWSELYPEFFAPLTQNQSHDDPKDKKEKR
                                             10        20        30

      100       110       120       130       140       150        
pF1KB6 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQN
               40        50        60        70        80        90

      160       170       180       190       200       210        
pF1KB6 IACLRSNAMKHLPNFFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IACLRSNAMKHLPNFFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGL
              100       110       120       130       140       150

      220       230       240       250       260       270        
pF1KB6 VYTITDVLELHDWMCTHFEEHPLFERVPLEDLSEDPVVGHLGTSTEEGKKVLRNGGKNFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VYTITDVLELHDWMCTHFEEHPLFERVPLEDLSEDPVVGHLGTSTEEGKKVLRNGGKNFP
              160       170       180       190       200       210

      280       290       300 
pF1KB6 AIFRRIQDPVLQAVTSQTSLPGH
       :::::::::::::::::::::::
XP_005 AIFRRIQDPVLQAVTSQTSLPGH
              220       230   

>>XP_016874794 (OMIM: 604466) PREDICTED: tRNA (guanine-N  (219 aa)
 initn: 1473 init1: 1473 opt: 1473  Z-score: 1819.1  bits: 344.2 E(85289): 1.4e-94
Smith-Waterman score: 1473; 100.0% identity (100.0% similar) in 216 aa overlap (1-216:1-216)

               10        20        30        40        50        60
pF1KB6 MAASLTCASGLRLHVDLVEKPRTGIMAAETRNVAGAEAPPPQKRYYRQRAHSNPMADHTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAASLTCASGLRLHVDLVEKPRTGIMAAETRNVAGAEAPPPQKRYYRQRAHSNPMADHTL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RYPVKPEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RYPVKPEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 PLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 KMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHP
       ::::::::::::::::::::::::::::::::::::                        
XP_016 KMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGPPV                     
              190       200       210                              

              250       260       270       280       290       300
pF1KB6 LFERVPLEDLSEDPVVGHLGTSTEEGKKVLRNGGKNFPAIFRRIQDPVLQAVTSQTSLPG

>>NP_075422 (OMIM: 604466) tRNA (guanine-N(7)-)-methyltr  (155 aa)
 initn: 642 init1: 642 opt: 642  Z-score: 797.4  bits: 154.6 E(85289): 1.1e-37
Smith-Waterman score: 642; 97.8% identity (100.0% similar) in 93 aa overlap (26-118:1-93)

               10        20        30        40        50        60
pF1KB6 MAASLTCASGLRLHVDLVEKPRTGIMAAETRNVAGAEAPPPQKRYYRQRAHSNPMADHTL
                                :::::::::::::::::::::::::::::::::::
NP_075                          MAAETRNVAGAEAPPPQKRYYRQRAHSNPMADHTL
                                        10        20        30     

               70        80        90       100       110       120
pF1KB6 RYPVKPEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::..  
NP_075 RYPVKPEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLADKD
          40        50        60        70        80        90     

              130       140       150       160       170       180
pF1KB6 PLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT
                                                                   
NP_075 VLPLPRPTFQADKAQVANHQSHPASRICLRAKSWGAGVYHNRCAGATRLDVHSFRRAPTV
         100       110       120       130       140       150     




301 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:45:43 2016 done: Fri Nov  4 20:45:44 2016
 Total Scan time:  6.480 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]