FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6387, 275 aa
  1>>>pF1KB6387 275 - 275 aa - 275 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4057+/-0.000708; mu= 14.8838+/- 0.043
 mean_var=67.1086+/-13.443, 0's: 0 Z-trim(109.3): 7  B-trim: 0 in 0/51
 Lambda= 0.156562
 statistics sampled from 10782 (10784) to 10782 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.331), width:  16
 Scan time:  2.580

The best scores are:                                      opt bits E(32554)
CCDS35016.1 EXOSC3 gene_id:51010|Hs108|chr9        ( 275) 1827 421.1 4.3e-118
CCDS43805.1 EXOSC3 gene_id:51010|Hs108|chr9        ( 164) 1054 246.4   1e-65


>>CCDS35016.1 EXOSC3 gene_id:51010|Hs108|chr9             (275 aa)
 initn: 1827 init1: 1827 opt: 1827  Z-score: 2233.6  bits: 421.1 E(32554): 4.3e-118
Smith-Waterman score: 1827; 100.0% identity (100.0% similar) in 275 aa overlap (1-275:1-275)

               10        20        30        40        50        60
pF1KB6 MAEPASVAAESLAGSRARAARTVLGQVVLPGEELLLPEQEDAEGPGGAVERPLSLNARAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MAEPASVAAESLAGSRARAARTVLGQVVLPGEELLLPEQEDAEGPGGAVERPLSLNARAC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKGDHVIGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKGDHVIGI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 VTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 VTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 IDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGKLYPLEIVFGMNGRIWVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 IDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGKLYPLEIVFGMNGRIWVK
              190       200       210       220       230       240

              250       260       270     
pF1KB6 AKTIQQTLILANILEACEHMTSDQRKQIFSRLAES
       :::::::::::::::::::::::::::::::::::
CCDS35 AKTIQQTLILANILEACEHMTSDQRKQIFSRLAES
              250       260       270     

>>CCDS43805.1 EXOSC3 gene_id:51010|Hs108|chr9             (164 aa)
 initn: 1054 init1: 1054 opt: 1054  Z-score: 1293.4  bits: 246.4 E(32554): 1e-65
Smith-Waterman score: 1054; 100.0% identity (100.0% similar) in 158 aa overlap (1-158:1-158)

               10        20        30        40        50        60
pF1KB6 MAEPASVAAESLAGSRARAARTVLGQVVLPGEELLLPEQEDAEGPGGAVERPLSLNARAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MAEPASVAAESLAGSRARAARTVLGQVVLPGEELLLPEQEDAEGPGGAVERPLSLNARAC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKGDHVIGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKGDHVIGI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 VTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVC
       ::::::::::::::::::::::::::::::::::::::                      
CCDS43 VTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQAISSRL                
              130       140       150       160                    

              190       200       210       220       230       240
pF1KB6 IDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGKLYPLEIVFGMNGRIWVK




275 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:05:46 2016 done: Fri Nov  4 18:05:47 2016
 Total Scan time:  2.580 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]