FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6387, 275 aa
  1>>>pF1KB6387 275 - 275 aa - 275 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3385+/-0.000324; mu= 15.2424+/- 0.020
 mean_var=68.8567+/-13.792, 0's: 0 Z-trim(115.5): 9  B-trim: 0 in 0/54
 Lambda= 0.154561
 statistics sampled from 26028 (26030) to 26028 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.305), width:  16
 Scan time:  6.650

The best scores are:                                      opt bits E(85289)
NP_057126 (OMIM: 606489,614678) exosome complex co ( 275) 1827 416.1 3.7e-116
NP_001002269 (OMIM: 606489,614678) exosome complex ( 164) 1054 243.6 1.8e-64


>>NP_057126 (OMIM: 606489,614678) exosome complex compon  (275 aa)
 initn: 1827 init1: 1827 opt: 1827  Z-score: 2206.5  bits: 416.1 E(85289): 3.7e-116
Smith-Waterman score: 1827; 100.0% identity (100.0% similar) in 275 aa overlap (1-275:1-275)

               10        20        30        40        50        60
pF1KB6 MAEPASVAAESLAGSRARAARTVLGQVVLPGEELLLPEQEDAEGPGGAVERPLSLNARAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MAEPASVAAESLAGSRARAARTVLGQVVLPGEELLLPEQEDAEGPGGAVERPLSLNARAC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKGDHVIGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 SRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKGDHVIGI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 VTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 VTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 IDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGKLYPLEIVFGMNGRIWVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 IDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGKLYPLEIVFGMNGRIWVK
              190       200       210       220       230       240

              250       260       270     
pF1KB6 AKTIQQTLILANILEACEHMTSDQRKQIFSRLAES
       :::::::::::::::::::::::::::::::::::
NP_057 AKTIQQTLILANILEACEHMTSDQRKQIFSRLAES
              250       260       270     

>>NP_001002269 (OMIM: 606489,614678) exosome complex com  (164 aa)
 initn: 1054 init1: 1054 opt: 1054  Z-score: 1278.3  bits: 243.6 E(85289): 1.8e-64
Smith-Waterman score: 1054; 100.0% identity (100.0% similar) in 158 aa overlap (1-158:1-158)

               10        20        30        40        50        60
pF1KB6 MAEPASVAAESLAGSRARAARTVLGQVVLPGEELLLPEQEDAEGPGGAVERPLSLNARAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAEPASVAAESLAGSRARAARTVLGQVVLPGEELLLPEQEDAEGPGGAVERPLSLNARAC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKGDHVIGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKGDHVIGI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 VTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVC
       ::::::::::::::::::::::::::::::::::::::                      
NP_001 VTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQAISSRL                
              130       140       150       160                    

              190       200       210       220       230       240
pF1KB6 IDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGKLYPLEIVFGMNGRIWVK




275 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:05:47 2016 done: Fri Nov  4 18:05:48 2016
 Total Scan time:  6.650 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]