FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6396, 304 aa
  1>>>pF1KB6396 304 - 304 aa - 304 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0597+/-0.000684; mu= 8.7209+/- 0.042
 mean_var=113.9448+/-22.511, 0's: 0 Z-trim(114.0): 6  B-trim: 0 in 0/51
 Lambda= 0.120151
 statistics sampled from 14605 (14609) to 14605 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.449), width:  16
 Scan time:  2.990

The best scores are:                                      opt bits E(32554)
CCDS33814.1 DPPA4 gene_id:55211|Hs108|chr3         ( 304) 2047 364.8 4.6e-101
CCDS2956.1 DPPA2 gene_id:151871|Hs108|chr3         ( 298)  574 109.5 3.3e-24


>>CCDS33814.1 DPPA4 gene_id:55211|Hs108|chr3              (304 aa)
 initn: 2047 init1: 2047 opt: 2047  Z-score: 1927.9  bits: 364.8 E(32554): 4.6e-101
Smith-Waterman score: 2047; 99.7% identity (100.0% similar) in 304 aa overlap (1-304:1-304)

               10        20        30        40        50        60
pF1KB6 MLRGSASSTSMEKAKGKEWTSTEKSREEDQQASNQPNSIALPGTSAKRTKEKMSVKGSKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
CCDS33 MLRGSASSTSMEKAKGKEWTSTEKSREEDQQASNQPNSIALPGTSAKRTKEKMSIKGSKV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LCPKKKAEHTDNPRPQKKIPIPPLPSKLPPVNLIHRDILRAWCQQLKLSSKGQKLDAYKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LCPKKKAEHTDNPRPQKKIPIPPLPSKLPPVNLIHRDILRAWCQQLKLSSKGQKLDAYKR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LCAFAYPNQKDFPSTAKEAKIRKSLQKKLKVEKGETSLQSSETHPPEVALPPVGEPPALE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LCAFAYPNQKDFPSTAKEAKIRKSLQKKLKVEKGETSLQSSETHPPEVALPPVGEPPALE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 NSTALLEGVNTVVVTTSAPEALLASWARISARARTPEAVESPQEASGVRWCVVHGKSLPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NSTALLEGVNTVVVTTSAPEALLASWARISARARTPEAVESPQEASGVRWCVVHGKSLPA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 DTDGWVHLQFHAGQAWVPEKQEGRVSALFLLPASNFPPPHLEDNMLCPKCVHRNKVLIKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DTDGWVHLQFHAGQAWVPEKQEGRVSALFLLPASNFPPPHLEDNMLCPKCVHRNKVLIKS
              250       260       270       280       290       300

           
pF1KB6 LQWE
       ::::
CCDS33 LQWE
           

>>CCDS2956.1 DPPA2 gene_id:151871|Hs108|chr3              (298 aa)
 initn: 691 init1: 222 opt: 574  Z-score: 548.1  bits: 109.5 E(32554): 3.3e-24
Smith-Waterman score: 693; 49.8% identity (67.2% similar) in 241 aa overlap (75-301:73-293)

           50        60        70           80        90       100 
pF1KB6 SAKRTKEKMSVKGSKVLCPKKKAEHTDNPRPQK---KIPIPPLPSKLPPVNLIHRDILRA
                                     :::   :::  :::. :::.: . :: :: 
CCDS29 SVSSTSDVKLEKPKKYNPGHLLQTNEQFTAPQKARCKIPALPLPTILPPINKVCRDTLRD
             50        60        70        80        90       100  

             110       120       130        140       150       160
pF1KB6 WCQQLKLSSKGQKLDAYKRLCAFAYPNQK-DFPSTAKEAKIRKSLQKKLKVEKGETSLQS
       ::::: ::..:.:...: ::   :::.:. :.:  ..:.....  .:.  : : .. :: 
CCDS29 WCQQLGLSTNGKKIEVYLRLHRHAYPEQRQDMPEMSQETRLQRCSRKRKAVTK-RARLQR
            110       120       130       140       150        160 

              170       180       190       200       210       220
pF1KB6 SETHPPEVALPPVGEPPALENSTALLEGVNTVVVTTSAPEALLASWARISARARTPEAVE
       :                   :  :  : .::: : :::: :.:::::::.:::  :.:..
CCDS29 SYEM----------------NERA--EETNTVEVITSAPGAMLASWARIAARAVQPKALN
                               170       180       190       200   

                        230       240       250       260       270
pF1KB6 S---P-------QEASGVRWCVVHGKSLPADTDGWVHLQFHAGQAWVPEKQEGRVSALFL
       :   :       ..:::::::::::. : ::: :::.:::::::::::  .. :. .:::
CCDS29 SCSIPVSVEAFLMQASGVRWCVVHGRLLSADTKGWVRLQFHAGQAWVPTTHR-RMISLFL
           210       220       230       240       250        260  

              280       290       300      
pF1KB6 LPASNFPPPHLEDNMLCPKCVHRNKVLIKSLQWE  
       :::  :: : .::::::: :..::: ..: :     
CCDS29 LPACIFPSPGIEDNMLCPDCAKRNKKMMKRLMTVEK
            270       280       290        




304 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:06:11 2016 done: Fri Nov  4 17:06:11 2016
 Total Scan time:  2.990 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]