Result of FASTA (omim) for
pF1KB6406
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6406, 335 aa
1>>>pF1KB6406 335 - 335 aa - 335 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2702+/-0.000423; mu= 11.8816+/- 0.026
mean_var=88.8044+/-19.286, 0's: 0 Z-trim(111.9): 59 B-trim: 1309 in 2/48
Lambda= 0.136100
statistics sampled from 20618 (20677) to 20618 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.609), E-opt: 0.2 (0.242), width: 16
Scan time: 6.420
The best scores are: opt bits E(85289)
NP_002681 (OMIM: 174760) DNA polymerase beta [Homo ( 335) 2196 441.3 1.3e-123
XP_005273595 (OMIM: 174760) PREDICTED: DNA polymer ( 221) 1430 290.9 1.8e-78
XP_016869072 (OMIM: 174760) PREDICTED: DNA polymer ( 221) 1430 290.9 1.8e-78
XP_005273592 (OMIM: 174760) PREDICTED: DNA polymer ( 370) 1430 291.0 2.7e-78
XP_005273593 (OMIM: 174760) PREDICTED: DNA polymer ( 341) 1412 287.4 2.9e-77
XP_005273594 (OMIM: 174760) PREDICTED: DNA polymer ( 306) 1320 269.3 7.4e-72
XP_005273596 (OMIM: 174760) PREDICTED: DNA polymer ( 181) 1214 248.4 8.7e-66
XP_006716416 (OMIM: 174760) PREDICTED: DNA polymer ( 181) 1214 248.4 8.7e-66
XP_016869073 (OMIM: 174760) PREDICTED: DNA polymer ( 181) 1214 248.4 8.7e-66
XP_005273597 (OMIM: 174760) PREDICTED: DNA polymer ( 181) 1214 248.4 8.7e-66
XP_016871580 (OMIM: 606343) PREDICTED: DNA polymer ( 406) 653 138.4 2.5e-32
XP_011537953 (OMIM: 606343) PREDICTED: DNA polymer ( 575) 653 138.5 3.4e-32
NP_001167555 (OMIM: 606343) DNA polymerase lambda ( 575) 653 138.5 3.4e-32
NP_037406 (OMIM: 606343) DNA polymerase lambda iso ( 575) 653 138.5 3.4e-32
XP_006717840 (OMIM: 606343) PREDICTED: DNA polymer ( 300) 622 132.3 1.3e-30
NP_001295311 (OMIM: 606343) DNA polymerase lambda ( 300) 622 132.3 1.3e-30
XP_006717839 (OMIM: 606343) PREDICTED: DNA polymer ( 314) 619 131.7 2e-30
XP_006717838 (OMIM: 606343) PREDICTED: DNA polymer ( 314) 619 131.7 2e-30
XP_016871575 (OMIM: 606343) PREDICTED: DNA polymer ( 469) 620 132.0 2.5e-30
NP_001167556 (OMIM: 606343) DNA polymerase lambda ( 483) 619 131.8 3e-30
XP_011537957 (OMIM: 606343) PREDICTED: DNA polymer ( 483) 619 131.8 3e-30
XP_011537962 (OMIM: 606343) PREDICTED: DNA polymer ( 413) 588 125.7 1.8e-28
XP_016871578 (OMIM: 606343) PREDICTED: DNA polymer ( 413) 588 125.7 1.8e-28
XP_011537961 (OMIM: 606343) PREDICTED: DNA polymer ( 413) 588 125.7 1.8e-28
XP_011537959 (OMIM: 606343) PREDICTED: DNA polymer ( 494) 588 125.7 2e-28
XP_011537952 (OMIM: 606343) PREDICTED: DNA polymer ( 582) 588 125.7 2.4e-28
XP_011537954 (OMIM: 606343) PREDICTED: DNA polymer ( 582) 588 125.7 2.4e-28
XP_011537955 (OMIM: 606343) PREDICTED: DNA polymer ( 582) 588 125.7 2.4e-28
XP_011537969 (OMIM: 606343) PREDICTED: DNA polymer ( 267) 577 123.4 5.4e-28
XP_011537966 (OMIM: 606343) PREDICTED: DNA polymer ( 307) 557 119.5 9.3e-27
XP_016871582 (OMIM: 606343) PREDICTED: DNA polymer ( 307) 557 119.5 9.3e-27
XP_011537968 (OMIM: 606343) PREDICTED: DNA polymer ( 307) 557 119.5 9.3e-27
XP_011537967 (OMIM: 606343) PREDICTED: DNA polymer ( 307) 557 119.5 9.3e-27
XP_011537964 (OMIM: 606343) PREDICTED: DNA polymer ( 321) 554 118.9 1.4e-26
XP_011537965 (OMIM: 606343) PREDICTED: DNA polymer ( 321) 554 118.9 1.4e-26
XP_011537958 (OMIM: 606343) PREDICTED: DNA polymer ( 476) 555 119.2 1.8e-26
XP_011537956 (OMIM: 606343) PREDICTED: DNA polymer ( 490) 554 119.0 2.1e-26
XP_016871574 (OMIM: 606343) PREDICTED: DNA polymer ( 474) 373 83.5 1e-15
XP_016871576 (OMIM: 606343) PREDICTED: DNA polymer ( 389) 365 81.9 2.5e-15
XP_016871573 (OMIM: 606343) PREDICTED: DNA polymer ( 481) 365 81.9 3e-15
NP_037416 (OMIM: 606344) DNA-directed DNA/RNA poly ( 494) 346 78.2 4.1e-14
XP_006715755 (OMIM: 606344) PREDICTED: DNA-directe ( 588) 346 78.2 4.8e-14
XP_011513581 (OMIM: 606344) PREDICTED: DNA-directe ( 499) 336 76.2 1.6e-13
XP_011513577 (OMIM: 606344) PREDICTED: DNA-directe ( 593) 336 76.3 1.9e-13
XP_006715759 (OMIM: 606344) PREDICTED: DNA-directe ( 498) 281 65.4 2.9e-10
NP_001017520 (OMIM: 187410) DNA nucleotidylexotran ( 508) 281 65.4 2.9e-10
NP_004079 (OMIM: 187410) DNA nucleotidylexotransfe ( 509) 281 65.4 2.9e-10
NP_001271260 (OMIM: 606344) DNA-directed DNA/RNA p ( 457) 214 52.2 2.4e-06
>>NP_002681 (OMIM: 174760) DNA polymerase beta [Homo sap (335 aa)
initn: 2196 init1: 2196 opt: 2196 Z-score: 2340.1 bits: 441.3 E(85289): 1.3e-123
Smith-Waterman score: 2196; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:1-335)
10 20 30 40 50 60
pF1KB6 MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 FRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 FRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP
250 260 270 280 290 300
310 320 330
pF1KB6 LGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDRSE
:::::::::::::::::::::::::::::::::::
NP_002 LGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDRSE
310 320 330
>>XP_005273595 (OMIM: 174760) PREDICTED: DNA polymerase (221 aa)
initn: 1430 init1: 1430 opt: 1430 Z-score: 1530.0 bits: 290.9 E(85289): 1.8e-78
Smith-Waterman score: 1430; 100.0% identity (100.0% similar) in 212 aa overlap (124-335:10-221)
100 110 120 130 140 150
pF1KB6 SSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPRE
::::::::::::::::::::::::::::::
XP_005 MTILKLKNADLRKNEDKLNHHQRIGLKYFGDFEKRIPRE
10 20 30
160 170 180 190 200 210
pF1KB6 EMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQ
40 50 60 70 80 90
220 230 240 250 260 270
pF1KB6 VVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFT
100 110 120 130 140 150
280 290 300 310 320 330
pF1KB6 GSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDR
160 170 180 190 200 210
pF1KB6 SE
::
XP_005 SE
220
>>XP_016869072 (OMIM: 174760) PREDICTED: DNA polymerase (221 aa)
initn: 1430 init1: 1430 opt: 1430 Z-score: 1530.0 bits: 290.9 E(85289): 1.8e-78
Smith-Waterman score: 1430; 100.0% identity (100.0% similar) in 212 aa overlap (124-335:10-221)
100 110 120 130 140 150
pF1KB6 SSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPRE
::::::::::::::::::::::::::::::
XP_016 MTILKLKNADLRKNEDKLNHHQRIGLKYFGDFEKRIPRE
10 20 30
160 170 180 190 200 210
pF1KB6 EMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQ
40 50 60 70 80 90
220 230 240 250 260 270
pF1KB6 VVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFT
100 110 120 130 140 150
280 290 300 310 320 330
pF1KB6 GSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDR
160 170 180 190 200 210
pF1KB6 SE
::
XP_016 SE
220
>>XP_005273592 (OMIM: 174760) PREDICTED: DNA polymerase (370 aa)
initn: 2182 init1: 1430 opt: 1430 Z-score: 1526.6 bits: 291.0 E(85289): 2.7e-78
Smith-Waterman score: 2098; 90.5% identity (90.5% similar) in 367 aa overlap (4-335:4-370)
10 20 30 40 50 60
pF1KB6 MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK
70 80 90 100 110 120
130 140
pF1KB6 TLE-----------------------------------DLRKNEDKLNHHQRIGLKYFGD
::: ::::::::::::::::::::::
XP_005 TLEGSQLDSCPVKGHLNGTESLLDLIWDVMTILKLKNADLRKNEDKLNHHQRIGLKYFGD
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB6 FEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSEST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSEST
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB6 KQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQY
250 260 270 280 290 300
270 280 290 300 310 320
pF1KB6 YCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQW
310 320 330 340 350 360
330
pF1KB6 KYREPKDRSE
::::::::::
XP_005 KYREPKDRSE
370
>>XP_005273593 (OMIM: 174760) PREDICTED: DNA polymerase (341 aa)
initn: 1982 init1: 766 opt: 1412 Z-score: 1508.0 bits: 287.4 E(85289): 2.9e-77
Smith-Waterman score: 1862; 82.7% identity (82.7% similar) in 370 aa overlap (1-335:1-341)
10 20 30 40 50 60
pF1KB6 MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK
70 80 90 100 110 120
130 140
pF1KB6 TLE-----------------------------------DLRKNEDKLNHHQRIGLKYFGD
::: ::::::::::::::::::::::
XP_005 TLEGSQLDSCPVKGHLNGTESLLDLIWDVMTILKLKNADLRKNEDKLNHHQRIGLKYFGD
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB6 FEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSEST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSEST
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB6 KQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQY
:: :::::::::::::::::::::::::::::
XP_005 KQ-----------------------------GVCQLPSKNDEKEYPHRRIDIRLIPKDQY
250 260 270
270 280 290 300 310 320
pF1KB6 YCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQW
280 290 300 310 320 330
330
pF1KB6 KYREPKDRSE
::::::::::
XP_005 KYREPKDRSE
340
>>XP_005273594 (OMIM: 174760) PREDICTED: DNA polymerase (306 aa)
initn: 1996 init1: 1320 opt: 1320 Z-score: 1411.1 bits: 269.3 E(85289): 7.4e-72
Smith-Waterman score: 1942; 91.3% identity (91.3% similar) in 335 aa overlap (1-335:1-306)
10 20 30 40 50 60
pF1KB6 MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 FRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ
::::::::::::::::::::::::::: ::::
XP_005 FRRGAESSGDMDVLLTHPSFTSESTKQ-----------------------------GVCQ
190 200 210
250 260 270 280 290 300
pF1KB6 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP
220 230 240 250 260 270
310 320 330
pF1KB6 LGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDRSE
:::::::::::::::::::::::::::::::::::
XP_005 LGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDRSE
280 290 300
>>XP_005273596 (OMIM: 174760) PREDICTED: DNA polymerase (181 aa)
initn: 1214 init1: 1214 opt: 1214 Z-score: 1302.1 bits: 248.4 E(85289): 8.7e-66
Smith-Waterman score: 1214; 100.0% identity (100.0% similar) in 181 aa overlap (155-335:1-181)
130 140 150 160 170 180
pF1KB6 LRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRG
::::::::::::::::::::::::::::::
XP_005 MLQMQDIVLNEVKKVDSEYIATVCGSFRRG
10 20 30
190 200 210 220 230 240
pF1KB6 AESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSK
40 50 60 70 80 90
250 260 270 280 290 300
pF1KB6 NDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVT
100 110 120 130 140 150
310 320 330
pF1KB6 GVAGEPLPVDSEKDIFDYIQWKYREPKDRSE
:::::::::::::::::::::::::::::::
XP_005 GVAGEPLPVDSEKDIFDYIQWKYREPKDRSE
160 170 180
>>XP_006716416 (OMIM: 174760) PREDICTED: DNA polymerase (181 aa)
initn: 1214 init1: 1214 opt: 1214 Z-score: 1302.1 bits: 248.4 E(85289): 8.7e-66
Smith-Waterman score: 1214; 100.0% identity (100.0% similar) in 181 aa overlap (155-335:1-181)
130 140 150 160 170 180
pF1KB6 LRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRG
::::::::::::::::::::::::::::::
XP_006 MLQMQDIVLNEVKKVDSEYIATVCGSFRRG
10 20 30
190 200 210 220 230 240
pF1KB6 AESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSK
40 50 60 70 80 90
250 260 270 280 290 300
pF1KB6 NDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVT
100 110 120 130 140 150
310 320 330
pF1KB6 GVAGEPLPVDSEKDIFDYIQWKYREPKDRSE
:::::::::::::::::::::::::::::::
XP_006 GVAGEPLPVDSEKDIFDYIQWKYREPKDRSE
160 170 180
>>XP_016869073 (OMIM: 174760) PREDICTED: DNA polymerase (181 aa)
initn: 1214 init1: 1214 opt: 1214 Z-score: 1302.1 bits: 248.4 E(85289): 8.7e-66
Smith-Waterman score: 1214; 100.0% identity (100.0% similar) in 181 aa overlap (155-335:1-181)
130 140 150 160 170 180
pF1KB6 LRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRG
::::::::::::::::::::::::::::::
XP_016 MLQMQDIVLNEVKKVDSEYIATVCGSFRRG
10 20 30
190 200 210 220 230 240
pF1KB6 AESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSK
40 50 60 70 80 90
250 260 270 280 290 300
pF1KB6 NDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVT
100 110 120 130 140 150
310 320 330
pF1KB6 GVAGEPLPVDSEKDIFDYIQWKYREPKDRSE
:::::::::::::::::::::::::::::::
XP_016 GVAGEPLPVDSEKDIFDYIQWKYREPKDRSE
160 170 180
>>XP_005273597 (OMIM: 174760) PREDICTED: DNA polymerase (181 aa)
initn: 1214 init1: 1214 opt: 1214 Z-score: 1302.1 bits: 248.4 E(85289): 8.7e-66
Smith-Waterman score: 1214; 100.0% identity (100.0% similar) in 181 aa overlap (155-335:1-181)
130 140 150 160 170 180
pF1KB6 LRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRG
::::::::::::::::::::::::::::::
XP_005 MLQMQDIVLNEVKKVDSEYIATVCGSFRRG
10 20 30
190 200 210 220 230 240
pF1KB6 AESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSK
40 50 60 70 80 90
250 260 270 280 290 300
pF1KB6 NDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVT
100 110 120 130 140 150
310 320 330
pF1KB6 GVAGEPLPVDSEKDIFDYIQWKYREPKDRSE
:::::::::::::::::::::::::::::::
XP_005 GVAGEPLPVDSEKDIFDYIQWKYREPKDRSE
160 170 180
335 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 20:50:30 2016 done: Fri Nov 4 20:50:31 2016
Total Scan time: 6.420 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]