FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6409, 307 aa 1>>>pF1KB6409 307 - 307 aa - 307 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.8459+/-0.000819; mu= 5.2423+/- 0.050 mean_var=154.8149+/-31.862, 0's: 0 Z-trim(112.5): 7 B-trim: 0 in 0/53 Lambda= 0.103078 statistics sampled from 13206 (13211) to 13206 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.406), width: 16 Scan time: 2.800 The best scores are: opt bits E(32554) CCDS5197.1 VTA1 gene_id:51534|Hs108|chr6 ( 307) 2047 315.6 3e-86 CCDS75531.1 VTA1 gene_id:51534|Hs108|chr6 ( 280) 1575 245.4 3.8e-65 CCDS69214.1 VTA1 gene_id:51534|Hs108|chr6 ( 222) 1107 175.7 2.8e-44 >>CCDS5197.1 VTA1 gene_id:51534|Hs108|chr6 (307 aa) initn: 2047 init1: 2047 opt: 2047 Z-score: 1661.9 bits: 315.6 E(32554): 3e-86 Smith-Waterman score: 2047; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:1-307) 10 20 30 40 50 60 pF1KB6 MAALAPLPPLPAQFKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS51 MAALAPLPPLPAQFKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 SKLMDQLEALKKQLGDNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS51 SKLMDQLEALKKQLGDNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 ASLLIDVITVFGELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEDNDIEENED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS51 ASLLIDVITVFGELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEDNDIEENED 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB6 AGAASLPTQPTQPSSSSTYDPSNMPSGNYTGIQIPPGAHAPANTPAEVPHSTGVASNTIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS51 AGAASLPTQPTQPSSSSTYDPSNMPSGNYTGIQIPPGAHAPANTPAEVPHSTGVASNTIQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB6 PTPQTIPAIDPALFNTISQGDVRLTPEDFARAQKYCKYAGSALQYEDVSTAVQNLQKALK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS51 PTPQTIPAIDPALFNTISQGDVRLTPEDFARAQKYCKYAGSALQYEDVSTAVQNLQKALK 250 260 270 280 290 300 pF1KB6 LLTTGRE ::::::: CCDS51 LLTTGRE >>CCDS75531.1 VTA1 gene_id:51534|Hs108|chr6 (280 aa) initn: 1575 init1: 1575 opt: 1575 Z-score: 1283.1 bits: 245.4 E(32554): 3.8e-65 Smith-Waterman score: 1809; 91.2% identity (91.2% similar) in 307 aa overlap (1-307:1-280) 10 20 30 40 50 60 pF1KB6 MAALAPLPPLPAQFKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 MAALAPLPPLPAQFKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 SKLMDQLEALKKQLGDNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 SKLMDQLEALKKQLGDNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 ASLLIDVITVFGELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEDNDIEENED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 ASLLIDVITVFGELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEDNDIEENED 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB6 AGAASLPTQPTQPSSSSTYDPSNMPSGNYTGIQIPPGAHAPANTPAEVPHSTGVASNTIQ ::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 AGAASLPTQPTQPSSSSTYDPSNMPSGNYTGIQIPPGAHAPANTPAEVPHSTG------- 190 200 210 220 230 250 260 270 280 290 300 pF1KB6 PTPQTIPAIDPALFNTISQGDVRLTPEDFARAQKYCKYAGSALQYEDVSTAVQNLQKALK :::::::::::::::::::::::::::::::::::::::: CCDS75 --------------------DVRLTPEDFARAQKYCKYAGSALQYEDVSTAVQNLQKALK 240 250 260 270 pF1KB6 LLTTGRE ::::::: CCDS75 LLTTGRE 280 >>CCDS69214.1 VTA1 gene_id:51534|Hs108|chr6 (222 aa) initn: 1105 init1: 1105 opt: 1107 Z-score: 908.4 bits: 175.7 E(32554): 2.8e-44 Smith-Waterman score: 1341; 86.2% identity (87.4% similar) in 247 aa overlap (61-307:3-222) 40 50 60 70 80 90 pF1KB6 DPVVAYYCRLYAMQTGMKIDSKTPECRKFLSKLMDQLEALKKQLGDNEAITQEIVGCAHL :. . : .::::::::::::::::::::: CCDS69 MTSETLWWLITLKKQLGDNEAITQEIVGCAHL 10 20 30 100 110 120 130 140 150 pF1KB6 ENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITVFGELTDENVKHRKYARWKAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 ENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITVFGELTDENVKHRKYARWKAT 40 50 60 70 80 90 160 170 180 190 200 210 pF1KB6 YIHNCLKNGETPQAGPVGIEEDNDIEENEDAGAASLPTQPTQPSSSSTYDPSNMPSGNYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 YIHNCLKNGETPQAGPVGIEEDNDIEENEDAGAASLPTQPTQPSSSSTYDPSNMPSGNYT 100 110 120 130 140 150 220 230 240 250 260 270 pF1KB6 GIQIPPGAHAPANTPAEVPHSTGVASNTIQPTPQTIPAIDPALFNTISQGDVRLTPEDFA ::::::::::::::::::::::: :::::::::: CCDS69 GIQIPPGAHAPANTPAEVPHSTG---------------------------DVRLTPEDFA 160 170 180 280 290 300 pF1KB6 RAQKYCKYAGSALQYEDVSTAVQNLQKALKLLTTGRE ::::::::::::::::::::::::::::::::::::: CCDS69 RAQKYCKYAGSALQYEDVSTAVQNLQKALKLLTTGRE 190 200 210 220 307 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 22:53:24 2016 done: Fri Nov 4 22:53:24 2016 Total Scan time: 2.800 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]