FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6409, 307 aa
  1>>>pF1KB6409 307 - 307 aa - 307 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8459+/-0.000819; mu= 5.2423+/- 0.050
 mean_var=154.8149+/-31.862, 0's: 0 Z-trim(112.5): 7  B-trim: 0 in 0/53
 Lambda= 0.103078
 statistics sampled from 13206 (13211) to 13206 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.406), width:  16
 Scan time:  2.800

The best scores are:                                      opt bits E(32554)
CCDS5197.1 VTA1 gene_id:51534|Hs108|chr6           ( 307) 2047 315.6   3e-86
CCDS75531.1 VTA1 gene_id:51534|Hs108|chr6          ( 280) 1575 245.4 3.8e-65
CCDS69214.1 VTA1 gene_id:51534|Hs108|chr6          ( 222) 1107 175.7 2.8e-44


>>CCDS5197.1 VTA1 gene_id:51534|Hs108|chr6                (307 aa)
 initn: 2047 init1: 2047 opt: 2047  Z-score: 1661.9  bits: 315.6 E(32554): 3e-86
Smith-Waterman score: 2047; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:1-307)

               10        20        30        40        50        60
pF1KB6 MAALAPLPPLPAQFKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 MAALAPLPPLPAQFKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SKLMDQLEALKKQLGDNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 SKLMDQLEALKKQLGDNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ASLLIDVITVFGELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEDNDIEENED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 ASLLIDVITVFGELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEDNDIEENED
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 AGAASLPTQPTQPSSSSTYDPSNMPSGNYTGIQIPPGAHAPANTPAEVPHSTGVASNTIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 AGAASLPTQPTQPSSSSTYDPSNMPSGNYTGIQIPPGAHAPANTPAEVPHSTGVASNTIQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 PTPQTIPAIDPALFNTISQGDVRLTPEDFARAQKYCKYAGSALQYEDVSTAVQNLQKALK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 PTPQTIPAIDPALFNTISQGDVRLTPEDFARAQKYCKYAGSALQYEDVSTAVQNLQKALK
              250       260       270       280       290       300

              
pF1KB6 LLTTGRE
       :::::::
CCDS51 LLTTGRE
              

>>CCDS75531.1 VTA1 gene_id:51534|Hs108|chr6               (280 aa)
 initn: 1575 init1: 1575 opt: 1575  Z-score: 1283.1  bits: 245.4 E(32554): 3.8e-65
Smith-Waterman score: 1809; 91.2% identity (91.2% similar) in 307 aa overlap (1-307:1-280)

               10        20        30        40        50        60
pF1KB6 MAALAPLPPLPAQFKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MAALAPLPPLPAQFKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SKLMDQLEALKKQLGDNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SKLMDQLEALKKQLGDNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ASLLIDVITVFGELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEDNDIEENED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ASLLIDVITVFGELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEDNDIEENED
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 AGAASLPTQPTQPSSSSTYDPSNMPSGNYTGIQIPPGAHAPANTPAEVPHSTGVASNTIQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::::       
CCDS75 AGAASLPTQPTQPSSSSTYDPSNMPSGNYTGIQIPPGAHAPANTPAEVPHSTG-------
              190       200       210       220       230          

              250       260       270       280       290       300
pF1KB6 PTPQTIPAIDPALFNTISQGDVRLTPEDFARAQKYCKYAGSALQYEDVSTAVQNLQKALK
                           ::::::::::::::::::::::::::::::::::::::::
CCDS75 --------------------DVRLTPEDFARAQKYCKYAGSALQYEDVSTAVQNLQKALK
                               240       250       260       270   

              
pF1KB6 LLTTGRE
       :::::::
CCDS75 LLTTGRE
           280

>>CCDS69214.1 VTA1 gene_id:51534|Hs108|chr6               (222 aa)
 initn: 1105 init1: 1105 opt: 1107  Z-score: 908.4  bits: 175.7 E(32554): 2.8e-44
Smith-Waterman score: 1341; 86.2% identity (87.4% similar) in 247 aa overlap (61-307:3-222)

               40        50        60        70        80        90
pF1KB6 DPVVAYYCRLYAMQTGMKIDSKTPECRKFLSKLMDQLEALKKQLGDNEAITQEIVGCAHL
                                     :. .  : .:::::::::::::::::::::
CCDS69                             MTSETLWWLITLKKQLGDNEAITQEIVGCAHL
                                           10        20        30  

              100       110       120       130       140       150
pF1KB6 ENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITVFGELTDENVKHRKYARWKAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 ENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITVFGELTDENVKHRKYARWKAT
             40        50        60        70        80        90  

              160       170       180       190       200       210
pF1KB6 YIHNCLKNGETPQAGPVGIEEDNDIEENEDAGAASLPTQPTQPSSSSTYDPSNMPSGNYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 YIHNCLKNGETPQAGPVGIEEDNDIEENEDAGAASLPTQPTQPSSSSTYDPSNMPSGNYT
            100       110       120       130       140       150  

              220       230       240       250       260       270
pF1KB6 GIQIPPGAHAPANTPAEVPHSTGVASNTIQPTPQTIPAIDPALFNTISQGDVRLTPEDFA
       :::::::::::::::::::::::                           ::::::::::
CCDS69 GIQIPPGAHAPANTPAEVPHSTG---------------------------DVRLTPEDFA
            160       170                                  180     

              280       290       300       
pF1KB6 RAQKYCKYAGSALQYEDVSTAVQNLQKALKLLTTGRE
       :::::::::::::::::::::::::::::::::::::
CCDS69 RAQKYCKYAGSALQYEDVSTAVQNLQKALKLLTTGRE
         190       200       210       220  




307 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:53:24 2016 done: Fri Nov  4 22:53:24 2016
 Total Scan time:  2.800 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]