FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6409, 307 aa
  1>>>pF1KB6409 307 - 307 aa - 307 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2756+/-0.000327; mu= 2.6277+/- 0.021
 mean_var=164.4676+/-34.455, 0's: 0 Z-trim(120.2): 10  B-trim: 2028 in 1/54
 Lambda= 0.100008
 statistics sampled from 35107 (35117) to 35107 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.761), E-opt: 0.2 (0.412), width:  16
 Scan time:  7.590

The best scores are:                                      opt bits E(85289)
NP_057569 (OMIM: 610902) vacuolar protein sorting- ( 307) 2047 306.8 3.6e-83
NP_001273300 (OMIM: 610902) vacuolar protein sorti ( 280) 1575 238.6 1.1e-62
NP_001273301 (OMIM: 610902) vacuolar protein sorti ( 222) 1107 171.1 1.9e-42


>>NP_057569 (OMIM: 610902) vacuolar protein sorting-asso  (307 aa)
 initn: 2047 init1: 2047 opt: 2047  Z-score: 1614.1  bits: 306.8 E(85289): 3.6e-83
Smith-Waterman score: 2047; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:1-307)

               10        20        30        40        50        60
pF1KB6 MAALAPLPPLPAQFKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MAALAPLPPLPAQFKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SKLMDQLEALKKQLGDNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 SKLMDQLEALKKQLGDNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ASLLIDVITVFGELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEDNDIEENED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 ASLLIDVITVFGELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEDNDIEENED
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 AGAASLPTQPTQPSSSSTYDPSNMPSGNYTGIQIPPGAHAPANTPAEVPHSTGVASNTIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 AGAASLPTQPTQPSSSSTYDPSNMPSGNYTGIQIPPGAHAPANTPAEVPHSTGVASNTIQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 PTPQTIPAIDPALFNTISQGDVRLTPEDFARAQKYCKYAGSALQYEDVSTAVQNLQKALK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 PTPQTIPAIDPALFNTISQGDVRLTPEDFARAQKYCKYAGSALQYEDVSTAVQNLQKALK
              250       260       270       280       290       300

              
pF1KB6 LLTTGRE
       :::::::
NP_057 LLTTGRE
              

>>NP_001273300 (OMIM: 610902) vacuolar protein sorting-a  (280 aa)
 initn: 1575 init1: 1575 opt: 1575  Z-score: 1246.6  bits: 238.6 E(85289): 1.1e-62
Smith-Waterman score: 1809; 91.2% identity (91.2% similar) in 307 aa overlap (1-307:1-280)

               10        20        30        40        50        60
pF1KB6 MAALAPLPPLPAQFKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAALAPLPPLPAQFKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SKLMDQLEALKKQLGDNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SKLMDQLEALKKQLGDNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ASLLIDVITVFGELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEDNDIEENED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASLLIDVITVFGELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEDNDIEENED
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 AGAASLPTQPTQPSSSSTYDPSNMPSGNYTGIQIPPGAHAPANTPAEVPHSTGVASNTIQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::::       
NP_001 AGAASLPTQPTQPSSSSTYDPSNMPSGNYTGIQIPPGAHAPANTPAEVPHSTG-------
              190       200       210       220       230          

              250       260       270       280       290       300
pF1KB6 PTPQTIPAIDPALFNTISQGDVRLTPEDFARAQKYCKYAGSALQYEDVSTAVQNLQKALK
                           ::::::::::::::::::::::::::::::::::::::::
NP_001 --------------------DVRLTPEDFARAQKYCKYAGSALQYEDVSTAVQNLQKALK
                               240       250       260       270   

              
pF1KB6 LLTTGRE
       :::::::
NP_001 LLTTGRE
           280

>>NP_001273301 (OMIM: 610902) vacuolar protein sorting-a  (222 aa)
 initn: 1105 init1: 1105 opt: 1107  Z-score: 883.2  bits: 171.1 E(85289): 1.9e-42
Smith-Waterman score: 1341; 86.2% identity (87.4% similar) in 247 aa overlap (61-307:3-222)

               40        50        60        70        80        90
pF1KB6 DPVVAYYCRLYAMQTGMKIDSKTPECRKFLSKLMDQLEALKKQLGDNEAITQEIVGCAHL
                                     :. .  : .:::::::::::::::::::::
NP_001                             MTSETLWWLITLKKQLGDNEAITQEIVGCAHL
                                           10        20        30  

              100       110       120       130       140       150
pF1KB6 ENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITVFGELTDENVKHRKYARWKAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITVFGELTDENVKHRKYARWKAT
             40        50        60        70        80        90  

              160       170       180       190       200       210
pF1KB6 YIHNCLKNGETPQAGPVGIEEDNDIEENEDAGAASLPTQPTQPSSSSTYDPSNMPSGNYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YIHNCLKNGETPQAGPVGIEEDNDIEENEDAGAASLPTQPTQPSSSSTYDPSNMPSGNYT
            100       110       120       130       140       150  

              220       230       240       250       260       270
pF1KB6 GIQIPPGAHAPANTPAEVPHSTGVASNTIQPTPQTIPAIDPALFNTISQGDVRLTPEDFA
       :::::::::::::::::::::::                           ::::::::::
NP_001 GIQIPPGAHAPANTPAEVPHSTG---------------------------DVRLTPEDFA
            160       170                                  180     

              280       290       300       
pF1KB6 RAQKYCKYAGSALQYEDVSTAVQNLQKALKLLTTGRE
       :::::::::::::::::::::::::::::::::::::
NP_001 RAQKYCKYAGSALQYEDVSTAVQNLQKALKLLTTGRE
         190       200       210       220  




307 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:53:25 2016 done: Fri Nov  4 22:53:26 2016
 Total Scan time:  7.590 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]