FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6418, 337 aa
  1>>>pF1KB6418 337 - 337 aa - 337 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2515+/-0.000438; mu= 16.0835+/- 0.027
 mean_var=58.5360+/-11.798, 0's: 0 Z-trim(109.6): 24  B-trim: 400 in 1/53
 Lambda= 0.167634
 statistics sampled from 17800 (17811) to 17800 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.574), E-opt: 0.2 (0.209), width:  16
 Scan time:  7.690

The best scores are:                                      opt bits E(85289)
NP_006746 (OMIM: 602063,606003) transaldolase [Hom ( 337) 2160 531.0 1.4e-150


>>NP_006746 (OMIM: 602063,606003) transaldolase [Homo sa  (337 aa)
 initn: 2160 init1: 2160 opt: 2160  Z-score: 2824.4  bits: 531.0 E(85289): 1.4e-150
Smith-Waterman score: 2160; 100.0% identity (100.0% similar) in 337 aa overlap (1-337:1-337)

               10        20        30        40        50        60
pF1KB6 MSSSPVKRQRMESALDQLKQFTTVVADTGDFHAIDEYKPQDATTNPSLILAAAQMPAYQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MSSSPVKRQRMESALDQLKQFTTVVADTGDFHAIDEYKPQDATTNPSLILAAAQMPAYQE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LVEEAIAYGRKLGGSQEDQIKNAIDKLFVLFGAEILKKIPGRVSTEVDARLSFDKDAMVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LVEEAIAYGRKLGGSQEDQIKNAIDKLFVLFGAEILKKIPGRVSTEVDARLSFDKDAMVA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RARRLIELYKEAGISKDRILIKLSSTWEGIQAGKELEEQHGIHCNMTLLFSFAQAVACAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RARRLIELYKEAGISKDRILIKLSSTWEGIQAGKELEEQHGIHCNMTLLFSFAQAVACAE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 AGVTLISPFVGRILDWHVANTDKKSYEPLEDPGVKSVTKIYNYYKKFSYKTIVMGASFRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 AGVTLISPFVGRILDWHVANTDKKSYEPLEDPGVKSVTKIYNYYKKFSYKTIVMGASFRN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 TGEIKALAGCDFLTISPKLLGELLQDNAKLVPVLSAKAAQASDLEKIHLDEKSFRWLHNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TGEIKALAGCDFLTISPKLLGELLQDNAKLVPVLSAKAAQASDLEKIHLDEKSFRWLHNE
              250       260       270       280       290       300

              310       320       330       
pF1KB6 DQMAVEKLSDGIRKFAADAVKLERMLTERMFNAENGK
       :::::::::::::::::::::::::::::::::::::
NP_006 DQMAVEKLSDGIRKFAADAVKLERMLTERMFNAENGK
              310       320       330       




337 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:50:49 2016 done: Fri Nov  4 16:50:50 2016
 Total Scan time:  7.690 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]