FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6419, 309 aa
  1>>>pF1KB6419 309 - 309 aa - 309 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.6412+/-0.000978; mu= 1.1753+/- 0.059
 mean_var=205.4212+/-42.399, 0's: 0 Z-trim(111.2): 12  B-trim: 0 in 0/53
 Lambda= 0.089485
 statistics sampled from 12172 (12178) to 12172 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.374), width:  16
 Scan time:  2.760

The best scores are:                                      opt bits E(32554)
CCDS9750.1 MNAT1 gene_id:4331|Hs108|chr14          ( 309) 2058 277.9 6.7e-75
CCDS53899.1 MNAT1 gene_id:4331|Hs108|chr14         ( 267) 1244 172.8 2.6e-43


>>CCDS9750.1 MNAT1 gene_id:4331|Hs108|chr14               (309 aa)
 initn: 2058 init1: 2058 opt: 2058  Z-score: 1458.2  bits: 277.9 E(32554): 6.7e-75
Smith-Waterman score: 2058; 100.0% identity (100.0% similar) in 309 aa overlap (1-309:1-309)

               10        20        30        40        50        60
pF1KB6 MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QLFEDPTVDKEVEIRKKVLKIYNKREEDFPSLREYNDFLEEVEEIVFNLTNNVDLDNTKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 QLFEDPTVDKEVEIRKKVLKIYNKREEDFPSLREYNDFLEEVEEIVFNLTNNVDLDNTKK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KMEIYQKENKDVIQKNKLKLTREQEELEEALEVERQENEQRRLFIQKEEQLQQILKRKNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 KMEIYQKENKDVIQKNKLKLTREQEELEEALEVERQENEQRRLFIQKEEQLQQILKRKNK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 QAFLDELESSDLPVALLLAQHKDRSTQLEMQLEKPKPVKPVTFSTGIKMGQHISLAPIHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 QAFLDELESSDLPVALLLAQHKDRSTQLEMQLEKPKPVKPVTFSTGIKMGQHISLAPIHK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 LEEALYEYQPLQIETYGPHVPELEMLGRLGYLNHVRAASPQDLAGGYTSSLACHRALQDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 LEEALYEYQPLQIETYGPHVPELEMLGRLGYLNHVRAASPQDLAGGYTSSLACHRALQDA
              250       260       270       280       290       300

                
pF1KB6 FSGLFWQPS
       :::::::::
CCDS97 FSGLFWQPS
                

>>CCDS53899.1 MNAT1 gene_id:4331|Hs108|chr14              (267 aa)
 initn: 1241 init1: 1241 opt: 1244  Z-score: 891.1  bits: 172.8 E(32554): 2.6e-43
Smith-Waterman score: 1697; 86.4% identity (86.4% similar) in 309 aa overlap (1-309:1-267)

               10        20        30        40        50        60
pF1KB6 MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QLFEDPTVDKEVEIRKKVLKIYNKREEDFPSLREYNDFLEEVEEIVFNLTNNVDLDNTKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QLFEDPTVDKEVEIRKKVLKIYNKREEDFPSLREYNDFLEEVEEIVFNLTNNVDLDNTKK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KMEIYQKENKDVIQKNKLKLTREQEELEEALEVERQENEQRRLFIQKEEQLQQILKRKNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KMEIYQKENKDVIQKNKLKLTREQEELEEALEVERQENEQRRLFIQKEEQLQQILKRKNK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 QAFLDELESSDLPVALLLAQHKDRSTQLEMQLEKPKPVKPVTFSTGIKMGQHISLAPIHK
       :::::::                                          :::::::::::
CCDS53 QAFLDEL------------------------------------------GQHISLAPIHK
                                                        190        

              250       260       270       280       290       300
pF1KB6 LEEALYEYQPLQIETYGPHVPELEMLGRLGYLNHVRAASPQDLAGGYTSSLACHRALQDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LEEALYEYQPLQIETYGPHVPELEMLGRLGYLNHVRAASPQDLAGGYTSSLACHRALQDA
      200       210       220       230       240       250        

                
pF1KB6 FSGLFWQPS
       :::::::::
CCDS53 FSGLFWQPS
      260       




309 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:52:56 2016 done: Fri Nov  4 20:52:57 2016
 Total Scan time:  2.760 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]