FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6421, 309 aa
  1>>>pF1KB6421 309 - 309 aa - 309 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2457+/-0.000858; mu= 15.8063+/- 0.052
 mean_var=64.4198+/-12.689, 0's: 0 Z-trim(106.3): 20  B-trim: 0 in 0/52
 Lambda= 0.159796
 statistics sampled from 8903 (8909) to 8903 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.274), width:  16
 Scan time:  2.470

The best scores are:                                      opt bits E(32554)
CCDS31664.1 AASDHPPT gene_id:60496|Hs108|chr11     ( 309) 2128 499.2 1.6e-141


>>CCDS31664.1 AASDHPPT gene_id:60496|Hs108|chr11          (309 aa)
 initn: 2128 init1: 2128 opt: 2128  Z-score: 2654.3  bits: 499.2 E(32554): 1.6e-141
Smith-Waterman score: 2128; 100.0% identity (100.0% similar) in 309 aa overlap (1-309:1-309)

               10        20        30        40        50        60
pF1KB6 MVFPAKRFCLVPSMEGVRWAFSCGTWLPSRAEWLLAVRSIQPEEKERIGQFVFARDAKAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MVFPAKRFCLVPSMEGVRWAFSCGTWLPSRAEWLLAVRSIQPEEKERIGQFVFARDAKAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 MAGRLMIRKLVAEKLNIPWNHIRLQRTAKGKPVLAKDSSNPYPNFNFNISHQGDYAVLAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MAGRLMIRKLVAEKLNIPWNHIRLQRTAKGKPVLAKDSSNPYPNFNFNISHQGDYAVLAA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EPELQVGIDIMKTSFPGRGSIPEFFHIMKRKFTNKEWETIRSFKDEWTQLDMFYRNWALK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EPELQVGIDIMKTSFPGRGSIPEFFHIMKRKFTNKEWETIRSFKDEWTQLDMFYRNWALK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 ESFIKAIGVGLGFELQRLEFDLSPLNLDIGQVYKETRLFLDGEEEKEWAFEESKIDEHHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ESFIKAIGVGLGFELQRLEFDLSPLNLDIGQVYKETRLFLDGEEEKEWAFEESKIDEHHF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 VAVALRKPDGSRHQDVPSQDDSKPTQRQFTILNFNDLMSSAVPMTPEDPSFWDCFCFTEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VAVALRKPDGSRHQDVPSQDDSKPTQRQFTILNFNDLMSSAVPMTPEDPSFWDCFCFTEE
              250       260       270       280       290       300

                
pF1KB6 IPIRNGTKS
       :::::::::
CCDS31 IPIRNGTKS
                




309 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:56:33 2016 done: Fri Nov  4 22:56:33 2016
 Total Scan time:  2.470 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]