FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6421, 309 aa
  1>>>pF1KB6421 309 - 309 aa - 309 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9000+/-0.000353; mu= 17.9278+/- 0.022
 mean_var=68.1717+/-13.955, 0's: 0 Z-trim(113.4): 7  B-trim: 0 in 0/55
 Lambda= 0.155336
 statistics sampled from 22741 (22745) to 22741 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.648), E-opt: 0.2 (0.267), width:  16
 Scan time:  7.250

The best scores are:                                      opt bits E(85289)
NP_056238 (OMIM: 607756) L-aminoadipate-semialdehy ( 309) 2128 485.9 4.5e-137


>>NP_056238 (OMIM: 607756) L-aminoadipate-semialdehyde d  (309 aa)
 initn: 2128 init1: 2128 opt: 2128  Z-score: 2581.9  bits: 485.9 E(85289): 4.5e-137
Smith-Waterman score: 2128; 100.0% identity (100.0% similar) in 309 aa overlap (1-309:1-309)

               10        20        30        40        50        60
pF1KB6 MVFPAKRFCLVPSMEGVRWAFSCGTWLPSRAEWLLAVRSIQPEEKERIGQFVFARDAKAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MVFPAKRFCLVPSMEGVRWAFSCGTWLPSRAEWLLAVRSIQPEEKERIGQFVFARDAKAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 MAGRLMIRKLVAEKLNIPWNHIRLQRTAKGKPVLAKDSSNPYPNFNFNISHQGDYAVLAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MAGRLMIRKLVAEKLNIPWNHIRLQRTAKGKPVLAKDSSNPYPNFNFNISHQGDYAVLAA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EPELQVGIDIMKTSFPGRGSIPEFFHIMKRKFTNKEWETIRSFKDEWTQLDMFYRNWALK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EPELQVGIDIMKTSFPGRGSIPEFFHIMKRKFTNKEWETIRSFKDEWTQLDMFYRNWALK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 ESFIKAIGVGLGFELQRLEFDLSPLNLDIGQVYKETRLFLDGEEEKEWAFEESKIDEHHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 ESFIKAIGVGLGFELQRLEFDLSPLNLDIGQVYKETRLFLDGEEEKEWAFEESKIDEHHF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 VAVALRKPDGSRHQDVPSQDDSKPTQRQFTILNFNDLMSSAVPMTPEDPSFWDCFCFTEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 VAVALRKPDGSRHQDVPSQDDSKPTQRQFTILNFNDLMSSAVPMTPEDPSFWDCFCFTEE
              250       260       270       280       290       300

                
pF1KB6 IPIRNGTKS
       :::::::::
NP_056 IPIRNGTKS
                




309 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:56:33 2016 done: Fri Nov  4 22:56:35 2016
 Total Scan time:  7.250 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]