FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6431, 312 aa
  1>>>pF1KB6431 312 - 312 aa - 312 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0976+/-0.000689; mu= 13.1471+/- 0.042
 mean_var=87.2485+/-16.926, 0's: 0 Z-trim(112.1): 12  B-trim: 0 in 0/52
 Lambda= 0.137308
 statistics sampled from 12919 (12930) to 12919 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.397), width:  16
 Scan time:  2.450

The best scores are:                                      opt bits E(32554)
CCDS10457.1 NTHL1 gene_id:4913|Hs108|chr16         ( 312) 2126 430.3  9e-121


>>CCDS10457.1 NTHL1 gene_id:4913|Hs108|chr16              (312 aa)
 initn: 2126 init1: 2126 opt: 2126  Z-score: 2281.7  bits: 430.3 E(32554): 9e-121
Smith-Waterman score: 2126; 100.0% identity (100.0% similar) in 312 aa overlap (1-312:1-312)

               10        20        30        40        50        60
pF1KB6 MCSPQESGMTALSARMLTRSRSLGPGAGPRGCREEPGPLRRREAAAEARKSHSPVKRPRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MCSPQESGMTALSARMLTRSRSLGPGAGPRGCREEPGPLRRREAAAEARKSHSPVKRPRK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 AQRLRVAYEGSDSEKGEGAEPLKVPVWEPQDWQQQLVNIRAMRNKKDAPVDHLGTEHCYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AQRLRVAYEGSDSEKGEGAEPLKVPVWEPQDWQQQLVNIRAMRNKKDAPVDHLGTEHCYD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SSAPPKVRRYQVLLSLMLSSQTKDQVTAGAMQRLRARGLTVDSILQTDDATLGKLIYPVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SSAPPKVRRYQVLLSLMLSSQTKDQVTAGAMQRLRARGLTVDSILQTDDATLGKLIYPVG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 FWRSKVKYIKQTSAILQQHYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FWRSKVKYIKQTSAILQQHYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 HVHRIANRLRWTKKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVHPRCHAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 HVHRIANRLRWTKKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVHPRCHAC
              250       260       270       280       290       300

              310  
pF1KB6 LNQALCPAAQGL
       ::::::::::::
CCDS10 LNQALCPAAQGL
              310  




312 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:37:23 2016 done: Fri Nov  4 17:37:24 2016
 Total Scan time:  2.450 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]