Result of FASTA (ccds) for
pF1KB6436
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6436, 311 aa
1>>>pF1KB6436 311 - 311 aa - 311 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4168+/-0.00064; mu= 16.8177+/- 0.039
mean_var=83.2228+/-16.407, 0's: 0 Z-trim(113.2): 36 B-trim: 0 in 0/50
Lambda= 0.140590
statistics sampled from 13837 (13870) to 13837 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.426), width: 16
Scan time: 2.830
The best scores are: opt bits E(32554)
CCDS56461.1 PDCD2 gene_id:5134|Hs108|chr6 ( 311) 2221 459.4 1.6e-129
CCDS5316.1 PDCD2 gene_id:5134|Hs108|chr6 ( 344) 2036 421.9 3.4e-118
CCDS56460.1 PDCD2 gene_id:5134|Hs108|chr6 ( 195) 1377 288.0 3.9e-78
CCDS56462.1 PDCD2 gene_id:5134|Hs108|chr6 ( 188) 1372 287.0 7.6e-78
CCDS47521.1 PDCD2 gene_id:5134|Hs108|chr6 ( 228) 1192 250.6 8.6e-67
CCDS75557.1 PDCD2 gene_id:5134|Hs108|chr6 ( 221) 1187 249.5 1.7e-66
>>CCDS56461.1 PDCD2 gene_id:5134|Hs108|chr6 (311 aa)
initn: 2221 init1: 2221 opt: 2221 Z-score: 2438.7 bits: 459.4 E(32554): 1.6e-129
Smith-Waterman score: 2221; 100.0% identity (100.0% similar) in 311 aa overlap (1-311:1-311)
10 20 30 40 50 60
pF1KB6 MAAAGARPVELGFAESAPAWRLRSEQFPSKVYAPLPGRPDAFHRCIFLFCCREQPCCAGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MAAAGARPVELGFAESAPAWRLRSEQFPSKVYAPLPGRPDAFHRCIFLFCCREQPCCAGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RVFRNQLPRKNDFYSYEPPSENPPPETGESVCLQLKSGAHLCRVCGCLGPKTCSRCHKAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RVFRNQLPRKNDFYSYEPPSENPPPETGESVCLQLKSGAHLCRVCGCLGPKTCSRCHKAY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 YCSKEHQTLDWRLGHKQACAQPDHLDHIIPDHNFLFPEFEIVIETEDEIMPEVVEKEDYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 YCSKEHQTLDWRLGHKQACAQPDHLDHIIPDHNFLFPEFEIVIETEDEIMPEVVEKEDYS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 EIIGSMGEALEEELDSMAKHESREDKIFQKFKTQIALEPEQILRYGRGIAPIWISGENIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 EIIGSMGEALEEELDSMAKHESREDKIFQKFKTQIALEPEQILRYGRGIAPIWISGENIP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 QEKDIPDCPCGAKRILEFQVMPQLLNYLKADRLGKSIDWGILAVFTCAESCSLGTGYTEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 QEKDIPDCPCGAKRILEFQVMPQLLNYLKADRLGKSIDWGILAVFTCAESCSLGTGYTEE
250 260 270 280 290 300
310
pF1KB6 FVWKQDVTDTP
:::::::::::
CCDS56 FVWKQDVTDTP
310
>>CCDS5316.1 PDCD2 gene_id:5134|Hs108|chr6 (344 aa)
initn: 2022 init1: 2022 opt: 2036 Z-score: 2235.3 bits: 421.9 E(32554): 3.4e-118
Smith-Waterman score: 2138; 90.4% identity (90.4% similar) in 343 aa overlap (2-311:2-344)
10 20 30
pF1KB6 MAAAGARPVELGFAESAPAWRLRSEQFPSKV-----------------------------
::::::::::::::::::::::::::::::
CCDS53 MAAAGARPVELGFAESAPAWRLRSEQFPSKVGGRPAWLGAAGLPGPQALACELCGRPLSF
10 20 30 40 50 60
40 50 60 70 80
pF1KB6 ----YAPLPGRPDAFHRCIFLFCCREQPCCAGLRVFRNQLPRKNDFYSYEPPSENPPPET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LLQVYAPLPGRPDAFHRCIFLFCCREQPCCAGLRVFRNQLPRKNDFYSYEPPSENPPPET
70 80 90 100 110 120
90 100 110 120 130 140
pF1KB6 GESVCLQLKSGAHLCRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQACAQPDHLDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GESVCLQLKSGAHLCRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQACAQPDHLDH
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB6 IIPDHNFLFPEFEIVIETEDEIMPEVVEKEDYSEIIGSMGEALEEELDSMAKHESREDKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 IIPDHNFLFPEFEIVIETEDEIMPEVVEKEDYSEIIGSMGEALEEELDSMAKHESREDKI
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB6 FQKFKTQIALEPEQILRYGRGIAPIWISGENIPQEKDIPDCPCGAKRILEFQVMPQLLNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 FQKFKTQIALEPEQILRYGRGIAPIWISGENIPQEKDIPDCPCGAKRILEFQVMPQLLNY
250 260 270 280 290 300
270 280 290 300 310
pF1KB6 LKADRLGKSIDWGILAVFTCAESCSLGTGYTEEFVWKQDVTDTP
::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LKADRLGKSIDWGILAVFTCAESCSLGTGYTEEFVWKQDVTDTP
310 320 330 340
>>CCDS56460.1 PDCD2 gene_id:5134|Hs108|chr6 (195 aa)
initn: 1394 init1: 1377 opt: 1377 Z-score: 1516.3 bits: 288.0 E(32554): 3.9e-78
Smith-Waterman score: 1377; 97.4% identity (99.5% similar) in 192 aa overlap (1-192:1-192)
10 20 30 40 50 60
pF1KB6 MAAAGARPVELGFAESAPAWRLRSEQFPSKVYAPLPGRPDAFHRCIFLFCCREQPCCAGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MAAAGARPVELGFAESAPAWRLRSEQFPSKVYAPLPGRPDAFHRCIFLFCCREQPCCAGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RVFRNQLPRKNDFYSYEPPSENPPPETGESVCLQLKSGAHLCRVCGCLGPKTCSRCHKAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RVFRNQLPRKNDFYSYEPPSENPPPETGESVCLQLKSGAHLCRVCGCLGPKTCSRCHKAY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 YCSKEHQTLDWRLGHKQACAQPDHLDHIIPDHNFLFPEFEIVIETEDEIMPEVVEKEDYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 YCSKEHQTLDWRLGHKQACAQPDHLDHIIPDHNFLFPEFEIVIETEDEIMPEVVEKEDYS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 EIIGSMGEALEEELDSMAKHESREDKIFQKFKTQIALEPEQILRYGRGIAPIWISGENIP
:::::::. ...
CCDS56 EIIGSMGKQFQDFIH
190
>>CCDS56462.1 PDCD2 gene_id:5134|Hs108|chr6 (188 aa)
initn: 1372 init1: 1372 opt: 1372 Z-score: 1511.1 bits: 287.0 E(32554): 7.6e-78
Smith-Waterman score: 1372; 100.0% identity (100.0% similar) in 187 aa overlap (1-187:1-187)
10 20 30 40 50 60
pF1KB6 MAAAGARPVELGFAESAPAWRLRSEQFPSKVYAPLPGRPDAFHRCIFLFCCREQPCCAGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MAAAGARPVELGFAESAPAWRLRSEQFPSKVYAPLPGRPDAFHRCIFLFCCREQPCCAGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RVFRNQLPRKNDFYSYEPPSENPPPETGESVCLQLKSGAHLCRVCGCLGPKTCSRCHKAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RVFRNQLPRKNDFYSYEPPSENPPPETGESVCLQLKSGAHLCRVCGCLGPKTCSRCHKAY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 YCSKEHQTLDWRLGHKQACAQPDHLDHIIPDHNFLFPEFEIVIETEDEIMPEVVEKEDYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 YCSKEHQTLDWRLGHKQACAQPDHLDHIIPDHNFLFPEFEIVIETEDEIMPEVVEKEDYS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 EIIGSMGEALEEELDSMAKHESREDKIFQKFKTQIALEPEQILRYGRGIAPIWISGENIP
:::::::
CCDS56 EIIGSMGI
>>CCDS47521.1 PDCD2 gene_id:5134|Hs108|chr6 (228 aa)
initn: 1368 init1: 1176 opt: 1192 Z-score: 1312.6 bits: 250.6 E(32554): 8.6e-67
Smith-Waterman score: 1294; 83.0% identity (84.8% similar) in 224 aa overlap (2-192:2-225)
10 20 30
pF1KB6 MAAAGARPVELGFAESAPAWRLRSEQFPSKV-----------------------------
::::::::::::::::::::::::::::::
CCDS47 MAAAGARPVELGFAESAPAWRLRSEQFPSKVGGRPAWLGAAGLPGPQALACELCGRPLSF
10 20 30 40 50 60
40 50 60 70 80
pF1KB6 ----YAPLPGRPDAFHRCIFLFCCREQPCCAGLRVFRNQLPRKNDFYSYEPPSENPPPET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LLQVYAPLPGRPDAFHRCIFLFCCREQPCCAGLRVFRNQLPRKNDFYSYEPPSENPPPET
70 80 90 100 110 120
90 100 110 120 130 140
pF1KB6 GESVCLQLKSGAHLCRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQACAQPDHLDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GESVCLQLKSGAHLCRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQACAQPDHLDH
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB6 IIPDHNFLFPEFEIVIETEDEIMPEVVEKEDYSEIIGSMGEALEEELDSMAKHESREDKI
::::::::::::::::::::::::::::::::::::::::. ...
CCDS47 IIPDHNFLFPEFEIVIETEDEIMPEVVEKEDYSEIIGSMGKQFQDFIH
190 200 210 220
210 220 230 240 250 260
pF1KB6 FQKFKTQIALEPEQILRYGRGIAPIWISGENIPQEKDIPDCPCGAKRILEFQVMPQLLNY
>>CCDS75557.1 PDCD2 gene_id:5134|Hs108|chr6 (221 aa)
initn: 1173 init1: 1173 opt: 1187 Z-score: 1307.3 bits: 249.5 E(32554): 1.7e-66
Smith-Waterman score: 1289; 84.9% identity (84.9% similar) in 219 aa overlap (2-187:2-220)
10 20 30
pF1KB6 MAAAGARPVELGFAESAPAWRLRSEQFPSKV-----------------------------
::::::::::::::::::::::::::::::
CCDS75 MAAAGARPVELGFAESAPAWRLRSEQFPSKVGGRPAWLGAAGLPGPQALACELCGRPLSF
10 20 30 40 50 60
40 50 60 70 80
pF1KB6 ----YAPLPGRPDAFHRCIFLFCCREQPCCAGLRVFRNQLPRKNDFYSYEPPSENPPPET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LLQVYAPLPGRPDAFHRCIFLFCCREQPCCAGLRVFRNQLPRKNDFYSYEPPSENPPPET
70 80 90 100 110 120
90 100 110 120 130 140
pF1KB6 GESVCLQLKSGAHLCRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQACAQPDHLDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GESVCLQLKSGAHLCRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQACAQPDHLDH
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB6 IIPDHNFLFPEFEIVIETEDEIMPEVVEKEDYSEIIGSMGEALEEELDSMAKHESREDKI
::::::::::::::::::::::::::::::::::::::::
CCDS75 IIPDHNFLFPEFEIVIETEDEIMPEVVEKEDYSEIIGSMGI
190 200 210 220
210 220 230 240 250 260
pF1KB6 FQKFKTQIALEPEQILRYGRGIAPIWISGENIPQEKDIPDCPCGAKRILEFQVMPQLLNY
311 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 21:28:54 2016 done: Sat Nov 5 21:28:54 2016
Total Scan time: 2.830 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]