FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6437, 313 aa
  1>>>pF1KB6437 313 - 313 aa - 313 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9365+/-0.00122; mu= 6.7785+/- 0.072
 mean_var=104.2574+/-22.153, 0's: 0 Z-trim(104.8): 240  B-trim: 243 in 2/49
 Lambda= 0.125609
 statistics sampled from 7829 (8105) to 7829 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.249), width:  16
 Scan time:  2.580

The best scores are:                                      opt bits E(32554)
CCDS4020.1 ANKRA2 gene_id:57763|Hs108|chr5         ( 313) 2056 383.5 1.1e-106
CCDS12395.1 RFXANK gene_id:8625|Hs108|chr19        ( 260)  795 155.0 5.8e-38
CCDS62611.1 RFXANK gene_id:8625|Hs108|chr19        ( 238)  650 128.7 4.4e-30
CCDS12396.1 RFXANK gene_id:8625|Hs108|chr19        ( 237)  642 127.3 1.2e-29


>>CCDS4020.1 ANKRA2 gene_id:57763|Hs108|chr5              (313 aa)
 initn: 2056 init1: 2056 opt: 2056  Z-score: 2028.7  bits: 383.5 E(32554): 1.1e-106
Smith-Waterman score: 2056; 100.0% identity (100.0% similar) in 313 aa overlap (1-313:1-313)

               10        20        30        40        50        60
pF1KB6 MDTSTNLDIGAQLIVEECPSTYSLTGMPDIKIEHPLDPNSEEGSAQGVAMGMKFILPNRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MDTSTNLDIGAQLIVEECPSTYSLTGMPDIKIEHPLDPNSEEGSAQGVAMGMKFILPNRF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DMNVCSRFVKSLNEEDSKNIQDQVNSDLEVASVLFKAECNIHTSPSPGIQVRHVYTPSTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 DMNVCSRFVKSLNEEDSKNIQDQVNSDLEVASVLFKAECNIHTSPSPGIQVRHVYTPSTT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KHFSPIKQSTTLTNKHRGNEVSTTPLLANSLSVHQLAAQGEMLYLATRIEQENVINHTDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 KHFSPIKQSTTLTNKHRGNEVSTTPLLANSLSVHQLAAQGEMLYLATRIEQENVINHTDE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI
              250       260       270       280       290       300

              310   
pF1KB6 ESHLLKLLQNIKE
       :::::::::::::
CCDS40 ESHLLKLLQNIKE
              310   

>>CCDS12395.1 RFXANK gene_id:8625|Hs108|chr19             (260 aa)
 initn: 872 init1: 613 opt: 795  Z-score: 795.0  bits: 155.0 E(32554): 5.8e-38
Smith-Waterman score: 795; 58.6% identity (78.9% similar) in 227 aa overlap (86-310:35-252)

          60        70        80        90       100        110    
pF1KB6 LPNRFDMNVCSRFVKSLNEEDSKNIQDQVNSDLEVASVLFKAECNIH-TSPSPGIQVRHV
                                     ::  : : ::   :. . ..: :  .:   
CCDS12 QPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLS-LFP--CTPEPVNPEPDASV---
           10        20        30        40           50           

          120       130       140       150       160       170    
pF1KB6 YTPSTTKHFSPIKQSTTLTNKHRGNEVSTTPLLANSLSVHQLAAQGEMLYLATRIEQ-EN
          :. .  : .:.::::::..::::::. :   .:::.::::::::.  :  .... .:
CCDS12 ---SSPQAGSSLKHSTTLTNRQRGNEVSALPATLDSLSIHQLAAQGELDQLKEHLRKGDN
          60        70        80        90       100       110     

           180       190       200       210       220       230   
pF1KB6 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM
       ..:. ::.:::::.::.: :.: .:.:::. ::::..:.: :::::::: . :::::: .
CCDS12 LVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGL
         120       130       140       150       160       170     

           240       250       260       270       280       290   
pF1KB6 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY
       ::.  ::.: :::::::::::::.:::::::. ::  ::: : :.::::. :::::::::
CCDS12 LLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGY
         180       190       200       210       220       230     

           300       310        
pF1KB6 RSVQQVIESHLLKLLQNIKE     
       :.::::::.:.:::.:.        
CCDS12 RKVQQVIENHILKLFQSNLVPADPE
         240       250       260

>>CCDS62611.1 RFXANK gene_id:8625|Hs108|chr19             (238 aa)
 initn: 801 init1: 613 opt: 650  Z-score: 653.6  bits: 128.7 E(32554): 4.4e-30
Smith-Waterman score: 682; 54.4% identity (72.6% similar) in 226 aa overlap (86-310:35-230)

          60        70        80        90       100        110    
pF1KB6 LPNRFDMNVCSRFVKSLNEEDSKNIQDQVNSDLEVASVLFKAECNIH-TSPSPGIQVRHV
                                     ::  : : ::   :. . ..: :  .:   
CCDS62 QPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLS-LFP--CTPEPVNPEPDASV---
           10        20        30        40           50           

          120       130       140       150       160       170    
pF1KB6 YTPSTTKHFSPIKQSTTLTNKHRGNEVSTTPLLANSLSVHQLAAQGEMLYLATRIEQENV
          :. .  : .:.::::::..::::::. :                    :: .. .:.
CCDS62 ---SSPQAGSSLKHSTTLTNRQRGNEVSALP--------------------AT-LDCDNL
          60        70        80                             90    

          180       190       200       210       220       230    
pF1KB6 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML
       .:. ::.:::::.::.: :.: .:.:::. ::::..:.: :::::::: . :::::: .:
CCDS62 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL
          100       110       120       130       140       150    

          240       250       260       270       280       290    
pF1KB6 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR
       :.  ::.: :::::::::::::.:::::::. ::  ::: : :.::::. ::::::::::
CCDS62 LERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR
          160       170       180       190       200       210    

          300       310        
pF1KB6 SVQQVIESHLLKLLQNIKE     
       .::::::.:.:::.:.        
CCDS62 KVQQVIENHILKLFQSNLVPADPE
          220       230        

>>CCDS12396.1 RFXANK gene_id:8625|Hs108|chr19             (237 aa)
 initn: 831 init1: 613 opt: 642  Z-score: 645.8  bits: 127.3 E(32554): 1.2e-29
Smith-Waterman score: 678; 59.9% identity (78.1% similar) in 187 aa overlap (124-310:64-229)

           100       110       120       130       140       150   
pF1KB6 LFKAECNIHTSPSPGIQVRHVYTPSTTKHFSPIKQSTTLTNKHRGNEVSTTPLLANSLSV
                                     : .:.::::::..::::::. :        
CCDS12 GSDTVVLSLFPCTPEPVNPEPDASVSSPQGSSLKHSTTLTNRQRGNEVSALP--------
            40        50        60        70        80             

           160       170       180       190       200       210   
pF1KB6 HQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK
                   :: .. .:..:. ::.:::::.::.: :.: .:.:::. ::::..:.:
CCDS12 ------------AT-LDCDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAK
                       90       100       110       120       130  

           220       230       240       250       260       270   
pF1KB6 GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD
        :::::::: . :::::: .::.  ::.: :::::::::::::.:::::::. ::  :::
CCDS12 ERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGAD
            140       150       160       170       180       190  

           280       290       300       310        
pF1KB6 PTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE     
        : :.::::. ::::::::::.::::::.:.:::.:.        
CCDS12 LTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADPE
            200       210       220       230       




313 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 08:16:26 2016 done: Sat Nov  5 08:16:27 2016
 Total Scan time:  2.580 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]