FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6442, 346 aa
  1>>>pF1KB6442 346 - 346 aa - 346 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6704+/-0.000812; mu= 19.8931+/- 0.049
 mean_var=65.4782+/-13.073, 0's: 0 Z-trim(107.4): 42  B-trim: 39 in 1/50
 Lambda= 0.158499
 statistics sampled from 9501 (9538) to 9501 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.293), width:  16
 Scan time:  2.710

The best scores are:                                      opt bits E(32554)
CCDS4871.1 PRPH2 gene_id:5961|Hs108|chr6           ( 346) 2347 545.4 2.6e-155
CCDS8024.1 ROM1 gene_id:6094|Hs108|chr11           ( 351)  802 192.1   6e-49


>>CCDS4871.1 PRPH2 gene_id:5961|Hs108|chr6                (346 aa)
 initn: 2347 init1: 2347 opt: 2347  Z-score: 2901.7  bits: 545.4 E(32554): 2.6e-155
Smith-Waterman score: 2347; 99.1% identity (99.7% similar) in 346 aa overlap (1-346:1-346)

               10        20        30        40        50        60
pF1KB6 MALLKVKFDQKKRVKLAQGLWLMNWFSVLAGIIIFSLGLFLKIELRKRSDVMNNSESHFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MALLKVKFDQKKRVKLAQGLWLMNWFSVLAGIIIFSLGLFLKIELRKRSDVMNNSESHFV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PNSLIGMGVLSCVFNSLAGKICYDALDPAKYARWKPWLKPYLAICVLFNIILFLVALCCF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 PNSLIGMGVLSCVFNSLAGKICYDALDPAKYARWKPWLKPYLAICVLFNIILFLVALCCF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LLRGSLENTLGQGLKNGMKYYRDTDTPGRCFMKKTIDMLQIEFKCCGNNGFRDWFEIQWI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 LLRGSLENTLGQGLKNGMKYYRDTDTPGRCFMKKTIDMLQIEFKCCGNNGFRDWFEIQWI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SNRYLDFSSKEVKDRIKSNVDGRYLVDGVPFSCCNPSSPRPCIQYQITNNSAHYSYDHQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 SNRYLDFSSKEVKDRIKSNVDGRYLVDGVPFSCCNPSSPRPCIQYQITNNSAHYSYDHQT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 EELNLWVRGCRAALLSYYSSLMNSMGVVTLLIWLFEVTITIGLRYLQTSLDGVSNPEESE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 EELNLWVRGCRAALLSYYSSLMNSMGVVTLLIWLFEVTITIGLRYLQTSLDGVSNPEESE
              250       260       270       280       290       300

              310       320       330       340      
pF1KB6 SESEGWLLEKSVPETWKAFLESVKKLGKGNQVEAEGAGAGQAPEAG
       :::.:::::.::::::::::::::::::::::::::: ::::::::
CCDS48 SESQGWLLERSVPETWKAFLESVKKLGKGNQVEAEGADAGQAPEAG
              310       320       330       340      

>>CCDS8024.1 ROM1 gene_id:6094|Hs108|chr11                (351 aa)
 initn: 764 init1: 662 opt: 802  Z-score: 992.3  bits: 192.1 E(32554): 6e-49
Smith-Waterman score: 802; 36.2% identity (70.7% similar) in 345 aa overlap (3-343:4-343)

                10        20        30        40        50         
pF1KB6  MALLKVKFDQKKRVKLAQGLWLMNWFSVLAGIIIFSLGLFLKIELRKRSDVMNNSESHF
          .: . .  . :..:::::::..:. .::: .:.  .  : ..::. .  .  : .  
CCDS80 MAPVLPLVLPLQPRIRLAQGLWLLSWLLALAGGVILLCSGHLLVQLRHLGTFLAPSCQFP
               10        20        30        40        50        60

      60         70         80        90       100       110       
pF1KB6 V-PNSLIGMGVLSCVFNSLAG-KICYDALDPAKYARWKPWLKPYLAICVLFNIILFLVAL
       : :.. .. :... . ..:.:      .:. : :  :.  : : :.  .  .  :..:.:
CCDS80 VLPQAALAAGAVA-LGTGLVGVGASRASLNAALYPPWRGVLGPLLVAGTAGGGGLLVVGL
               70         80        90       100       110         

       120        130       140       150       160       170      
pF1KB6 CCFL-LRGSLENTLGQGLKNGMKYYRDTDTPGRCFMKKTIDMLQIEFKCCGNNGFRDWFE
          : : :::...: .:: ... .:.::..::.:  :. .: ::....::: .:..::: 
CCDS80 GLALALPGSLDEALEEGLVTALAHYKDTEVPGHCQAKRLVDELQLRYHCCGRHGYKDWFG
     120       130       140       150       160       170         

        180       190       200       210       220       230      
pF1KB6 IQWISNRYLDFSSKEVKDRIKSNVDGRYLVDGVPFSCCNPSSPRPCIQYQITNNSAHYSY
       .::.:.:::: ....: :::.:::.: ::.:::::::::: :::::.: ..... ::  .
CCDS80 VQWVSSRYLDPGDRDVADRIQSNVEGLYLTDGVPFSCCNPHSPRPCLQNRLSDSYAHPLF
     180       190       200       210       220       230         

        240       250       260       270       280       290      
pF1KB6 DHQTEELNLWVRGCRAALLSYYSSLMNSMGVVTLLIWLFEVTITIGLRYLQTSLDGVSNP
       : .  . :::..::. .:: . ..: ...: .  . .:... . .:::::::.:.:... 
CCDS80 DPRQPNQNLWAQGCHEVLLEHLQDLAGTLGSMLAVTFLLQALVLLGLRYLQTALEGLGGV
     240       250       260       270       280       290         

        300       310        320       330       340           
pF1KB6 EESESESEGWLLEKSVPETWK-AFLESVKKLGKGNQVEAEGAGAGQAPEAG     
        .. .:..:.:. ... .  : :.:..    : . .   : :  :.::        
CCDS80 IDAGGETQGYLFPSGLKDMLKTAWLQG----GVACRPAPEEAPPGEAPPKEDLSEA
     300       310       320           330       340       350 




346 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:35:30 2016 done: Fri Nov  4 17:35:30 2016
 Total Scan time:  2.710 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]