Result of FASTA (ccds) for
pF1KB6448
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6448, 349 aa
1>>>pF1KB6448 349 - 349 aa - 349 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6039+/-0.00082; mu= 15.0369+/- 0.049
mean_var=68.6856+/-13.858, 0's: 0 Z-trim(107.5): 23 B-trim: 0 in 0/51
Lambda= 0.154754
statistics sampled from 9590 (9607) to 9590 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.295), width: 16
Scan time: 2.420
The best scores are: opt bits E(32554)
CCDS7498.1 HIF1AN gene_id:55662|Hs108|chr10 ( 349) 2427 550.7 6.8e-157
CCDS3017.1 HSPBAP1 gene_id:79663|Hs108|chr3 ( 488) 325 81.4 1.7e-15
CCDS10627.1 KDM8 gene_id:79831|Hs108|chr16 ( 416) 302 76.3 5.2e-14
CCDS45448.1 KDM8 gene_id:79831|Hs108|chr16 ( 454) 302 76.3 5.6e-14
>>CCDS7498.1 HIF1AN gene_id:55662|Hs108|chr10 (349 aa)
initn: 2427 init1: 2427 opt: 2427 Z-score: 2930.2 bits: 550.7 E(32554): 6.8e-157
Smith-Waterman score: 2427; 100.0% identity (100.0% similar) in 349 aa overlap (1-349:1-349)
10 20 30 40 50 60
pF1KB6 MAATAAEAVASGSGEPREEAGALGPAWDESQLRSYSFPTRPIPRLSQSDPRAEELIENEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MAATAAEAVASGSGEPREEAGALGPAWDESQLRSYSFPTRPIPRLSQSDPRAEELIENEE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PVVLTDTNLVYPALKWDLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPRSNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PVVLTDTNLVYPALKWDLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPRSNR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 EEMKFHEFVEKLQDIQQRGGEERLYLQQTLNDTVGRKIVMDFLGFNWNWINKQQGKRGWG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 EEMKFHEFVEKLQDIQQRGGEERLYLQQTLNDTVGRKIVMDFLGFNWNWINKQQGKRGWG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 QLTSNLLLIGMEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 QLTSNLLLIGMEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 QVDFDNPDYERFPNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWYKGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 QVDFDNPDYERFPNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWYKGA
250 260 270 280 290 300
310 320 330 340
pF1KB6 PTPKRIEYPLKAHQKVAIMRNIEKMLGEALGNPQEVGPLLNTMIKGRYN
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PTPKRIEYPLKAHQKVAIMRNIEKMLGEALGNPQEVGPLLNTMIKGRYN
310 320 330 340
>>CCDS3017.1 HSPBAP1 gene_id:79663|Hs108|chr3 (488 aa)
initn: 282 init1: 160 opt: 325 Z-score: 391.7 bits: 81.4 E(32554): 1.7e-15
Smith-Waterman score: 329; 27.0% identity (55.3% similar) in 300 aa overlap (51-341:32-309)
30 40 50 60 70
pF1KB6 GALGPAWDESQLRSYSFPTRPIPRLSQSDPRAEELIEN-EEPVVLTDTNLVYPALKWDLE
.:.:.: . ..:... . . .:: .:. .
CCDS30 AAGSEATTPVIVAAGAGGEEGEHVKPFKPEKAKEIIMSLQQPAIFCNMVFDWPARHWNAK
10 20 30 40 50 60
80 90 100 110 120 130
pF1KB6 YLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPRSNREEMKFHEFVEKLQDIQQRG
::.. : .. .: . :.:.. .:. : : ..::. : .. .
CCDS30 YLSQ--------VLHGKQIRF-RMGMKSMSTVPQFETTCNYVEATLEEFLTWNCDQSSIS
70 80 90 100 110
140 150 160 170 180 190
pF1KB6 GEERLYLQQTLNDTVGRKIVMDF------LGFNWNWINKQQGKRGWGQLTSNLLLIGMEG
: : : .. . . : ... : . .: . :. :: .. : :: :
CCDS30 GPFRDYDHSKFWAYADYKYFVSLFEDKTDLFQDVKWSDFGFPGRN-GQEST--LWIGSLG
120 130 140 150 160
200 210 220 230 240 250
pF1KB6 NVTPAHYDEQQ-NFFAQIKGYKRCILFPPDQFECLYPYPV-HHPCDRQSQVDFDNPDYER
:: : : :. :..: :: ::::.. ::: . .. . :... ::: .:
CCDS30 AHTPCHLDSYGCNLVFQVQGRKRWHLFPPEDTPFLYPTRIPYEESSVFSKINVVNPDLKR
170 180 190 200 210 220
260 270 280 290 300 310
pF1KB6 FPNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWYKGAPTPKRIEYPLK
::.:... . ....::.::..: .:::..::. .:...: : . .:
CCDS30 FPQFRKAQRHAVTLSPGQVLFVPRHWWHYVESI--DPVTVSINSWIE-------LEEDHL
230 240 250 260 270 280
320 330 340
pF1KB6 AHQKVAIMRNIEKMLGEALGNPQEVGPLLNTMIKGRYN
:. . :: : . : : :::.. ::
CCDS30 ARVEEAITRMLVCALKTAE-NPQNTRAWLNPTEVEETSHAVNCCYLNAAVSAFFDRCRTS
290 300 310 320 330
>>CCDS10627.1 KDM8 gene_id:79831|Hs108|chr16 (416 aa)
initn: 333 init1: 165 opt: 302 Z-score: 365.0 bits: 76.3 E(32554): 5.2e-14
Smith-Waterman score: 335; 28.2% identity (56.1% similar) in 262 aa overlap (40-297:182-415)
10 20 30 40 50 60
pF1KB6 ASGSGEPREEAGALGPAWDESQLRSYSFPTRPIPRLSQSDPRA--EELIENEEPVVLTDT
. .::: . . . :... .::.: .
CCDS10 KRPARGSLPEQPCTKKARADHGLIPDVKLEKTVPRLHRPSLQHFREQFLVPGRPVILKGV
160 170 180 190 200 210
70 80 90 100 110 120
pF1KB6 NLVYPAL-KWDLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPRSNREEMKFH
.: . ::.:::.:: : : .: : ::. .. : .
CCDS10 ADHWPCMQKWSLEYIQEIAGCRTVPVEVGSR----YTDEEW-----------SQTLMTVN
220 230 240 250
130 140 150 160 170 180
pF1KB6 EFVEKLQDIQQRGGEERLYL-QQTLNDTVGRKIVMDFLGFNWNWINKQQGKRGWGQLTSN
::. : . : . :: :. : : . .. .:. .. .. . . ..: :
CCDS10 EFISKYIVNEPR---DVGYLAQHQLFDQIP-ELKQDISIPDYCSLGDGEEE----EITIN
260 270 280 290 300
190 200 210 220 230 240
pF1KB6 LLLIGMEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFD
. : .:...: : : ::::..:. : : :. :.. :::. .: :::: .
CCDS10 AWF-GPQGTISPLHQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTHL-LHNTSQVDVE
310 320 330 340 350 360
250 260 270 280 290 300
pF1KB6 NPDYERFPNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWYKGAPTPKR
::: :.::.: .. ...::..:.::. .::....: ....:.::.
CCDS10 NPDLEKFPKFAKAPFLSCILSPGEILFIPVKYWHYVRAL---DLSFSVSFWWS
370 380 390 400 410
310 320 330 340
pF1KB6 IEYPLKAHQKVAIMRNIEKMLGEALGNPQEVGPLLNTMIKGRYN
>>CCDS45448.1 KDM8 gene_id:79831|Hs108|chr16 (454 aa)
initn: 333 init1: 165 opt: 302 Z-score: 364.4 bits: 76.3 E(32554): 5.6e-14
Smith-Waterman score: 335; 28.2% identity (56.1% similar) in 262 aa overlap (40-297:220-453)
10 20 30 40 50 60
pF1KB6 ASGSGEPREEAGALGPAWDESQLRSYSFPTRPIPRLSQSDPRA--EELIENEEPVVLTDT
. .::: . . . :... .::.: .
CCDS45 KRPARGSLPEQPCTKKARADHGLIPDVKLEKTVPRLHRPSLQHFREQFLVPGRPVILKGV
190 200 210 220 230 240
70 80 90 100 110 120
pF1KB6 NLVYPAL-KWDLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPRSNREEMKFH
.: . ::.:::.:: : : .: : ::. .. : .
CCDS45 ADHWPCMQKWSLEYIQEIAGCRTVPVEVGSR----YTDEEW-----------SQTLMTVN
250 260 270 280 290
130 140 150 160 170 180
pF1KB6 EFVEKLQDIQQRGGEERLYL-QQTLNDTVGRKIVMDFLGFNWNWINKQQGKRGWGQLTSN
::. : . : . :: :. : : . .. .:. .. .. . . ..: :
CCDS45 EFISKYIVNEPR---DVGYLAQHQLFDQIP-ELKQDISIPDYCSLGDGEEE----EITIN
300 310 320 330 340
190 200 210 220 230 240
pF1KB6 LLLIGMEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFD
. : .:...: : : ::::..:. : : :. :.. :::. .: :::: .
CCDS45 AWF-GPQGTISPLHQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTHL-LHNTSQVDVE
350 360 370 380 390 400
250 260 270 280 290 300
pF1KB6 NPDYERFPNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWYKGAPTPKR
::: :.::.: .. ...::..:.::. .::....: ....:.::.
CCDS45 NPDLEKFPKFAKAPFLSCILSPGEILFIPVKYWHYVRAL---DLSFSVSFWWS
410 420 430 440 450
310 320 330 340
pF1KB6 IEYPLKAHQKVAIMRNIEKMLGEALGNPQEVGPLLNTMIKGRYN
349 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 17:32:57 2016 done: Fri Nov 4 17:32:57 2016
Total Scan time: 2.420 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]