Result of FASTA (omim) for
pF1KB6450
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6450, 349 aa
1>>>pF1KB6450 349 - 349 aa - 349 aa
Library: /omim/omim.rfq.tfa
64369986 residues in 92320 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.6625+/-0.000337; mu= -0.8281+/- 0.021
mean_var=307.3086+/-63.751, 0's: 0 Z-trim(123.9): 66 B-trim: 0 in 0/54
Lambda= 0.073162
statistics sampled from 46416 (46482) to 46416 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.503), width: 16
Scan time: 4.730
The best scores are: opt bits E(92320)
NP_689901 (OMIM: 610487) KH domain-containing, RNA ( 349) 2353 261.2 2.7e-69
XP_016865834 (OMIM: 610487) KH domain-containing, ( 299) 1990 222.8 8.1e-58
XP_016865832 (OMIM: 610487) KH domain-containing, ( 305) 1990 222.8 8.2e-58
XP_011533817 (OMIM: 610487) KH domain-containing, ( 324) 1811 204.0 4.2e-52
XP_016865831 (OMIM: 610487) KH domain-containing, ( 316) 1810 203.8 4.4e-52
NP_001337551 (OMIM: 610487) KH domain-containing, ( 366) 1810 203.9 4.9e-52
XP_011533822 (OMIM: 610487) KH domain-containing, ( 285) 1805 203.3 5.9e-52
XP_016865830 (OMIM: 610487) KH domain-containing, ( 322) 1805 203.3 6.5e-52
XP_011533818 (OMIM: 610487) KH domain-containing, ( 322) 1805 203.3 6.5e-52
XP_011533821 (OMIM: 610487) KH domain-containing, ( 302) 1800 202.8 8.9e-52
XP_011533819 (OMIM: 610487) KH domain-containing, ( 320) 1800 202.8 9.3e-52
XP_016865829 (OMIM: 610487) KH domain-containing, ( 362) 1800 202.8 1e-51
XP_016865828 (OMIM: 610487) KH domain-containing, ( 362) 1800 202.8 1e-51
XP_016865825 (OMIM: 610487) KH domain-containing, ( 367) 1800 202.8 1e-51
XP_016865824 (OMIM: 610487) KH domain-containing, ( 381) 1800 202.9 1.1e-51
XP_016865823 (OMIM: 610487) KH domain-containing, ( 413) 1800 202.9 1.1e-51
XP_016865836 (OMIM: 610487) KH domain-containing, ( 251) 1725 194.8 1.9e-49
NP_006549 (OMIM: 610421) KH domain-containing, RNA ( 346) 1504 171.6 2.5e-42
NP_006550 (OMIM: 602489) KH domain-containing, RNA ( 443) 1434 164.3 5e-40
XP_011515098 (OMIM: 610421) KH domain-containing, ( 346) 1361 156.5 8.7e-38
XP_005250814 (OMIM: 610421) KH domain-containing, ( 318) 1353 155.6 1.5e-37
XP_011515099 (OMIM: 610421) KH domain-containing, ( 319) 1353 155.6 1.5e-37
XP_016865833 (OMIM: 610487) KH domain-containing, ( 300) 1322 152.3 1.4e-36
XP_005250815 (OMIM: 610421) KH domain-containing, ( 302) 1283 148.2 2.4e-35
XP_011515100 (OMIM: 610421) KH domain-containing, ( 303) 1165 135.7 1.3e-31
XP_024302820 (OMIM: 610421) KH domain-containing, ( 274) 1132 132.2 1.4e-30
XP_024302821 (OMIM: 610421) KH domain-containing, ( 252) 1030 121.4 2.3e-27
XP_011515101 (OMIM: 610421) KH domain-containing, ( 252) 970 115.1 1.9e-25
NP_001258807 (OMIM: 602489) KH domain-containing, ( 404) 876 105.4 2.5e-22
XP_016865835 (OMIM: 610487) KH domain-containing, ( 277) 773 94.3 3.6e-19
XP_016865827 (OMIM: 610487) KH domain-containing, ( 364) 769 94.0 5.8e-19
XP_016866992 (OMIM: 609590) protein quaking isofor ( 318) 476 63.0 1.1e-09
XP_011534560 (OMIM: 609590) protein quaking isofor ( 340) 476 63.1 1.1e-09
NP_996735 (OMIM: 609590) protein quaking isoform 2 ( 319) 475 62.9 1.2e-09
NP_996737 (OMIM: 609590) protein quaking isoform 4 ( 319) 475 62.9 1.2e-09
NP_996736 (OMIM: 609590) protein quaking isoform 3 ( 325) 475 62.9 1.2e-09
XP_016866991 (OMIM: 609590) protein quaking isofor ( 337) 475 63.0 1.2e-09
NP_006766 (OMIM: 609590) protein quaking isoform 1 ( 341) 475 63.0 1.2e-09
XP_016866993 (OMIM: 609590) protein quaking isofor ( 311) 469 62.3 1.8e-09
XP_011534561 (OMIM: 609590) protein quaking isofor ( 317) 469 62.3 1.8e-09
NP_001288014 (OMIM: 609590) protein quaking isofor ( 333) 469 62.3 1.9e-09
XP_011534563 (OMIM: 609590) protein quaking isofor ( 198) 385 53.2 6e-07
XP_011534562 (OMIM: 609590) protein quaking isofor ( 293) 270 41.3 0.0036
NP_001333338 (OMIM: 601516) splicing factor 1 isof ( 433) 260 40.4 0.0098
XP_024304448 (OMIM: 601516) splicing factor 1 isof ( 433) 260 40.4 0.0098
>>NP_689901 (OMIM: 610487) KH domain-containing, RNA-bin (349 aa)
initn: 2353 init1: 2353 opt: 2353 Z-score: 1365.8 bits: 261.2 E(92320): 2.7e-69
Smith-Waterman score: 2353; 99.7% identity (99.7% similar) in 349 aa overlap (1-349:1-349)
10 20 30 40 50 60
pF1KB6 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYGYDDGYGGEYDDQTYETYDNSYATQTQSVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYGYDDGYGGEYDDQTYETYDNSYATQTQSVP
250 260 270 280 290 300
310 320 330 340
pF1KB6 EYYDYGHGVSEDAYDSYAPEEWATTSSSLKAPPQRSARGGYREHPYGRY
::::::::::::::::::::::::: :::::::::::::::::::::::
NP_689 EYYDYGHGVSEDAYDSYAPEEWATTRSSLKAPPQRSARGGYREHPYGRY
310 320 330 340
>>XP_016865834 (OMIM: 610487) KH domain-containing, RNA- (299 aa)
initn: 1990 init1: 1990 opt: 1990 Z-score: 1159.6 bits: 222.8 E(92320): 8.1e-58
Smith-Waterman score: 1990; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:1-297)
10 20 30 40 50 60
pF1KB6 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYGYDDGYGGEYDDQTYETYDNSYATQTQSVP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYGYDDGYGGEYDDQTYETYDNSYATQTQRY
250 260 270 280 290
310 320 330 340
pF1KB6 EYYDYGHGVSEDAYDSYAPEEWATTSSSLKAPPQRSARGGYREHPYGRY
>>XP_016865832 (OMIM: 610487) KH domain-containing, RNA- (305 aa)
initn: 1990 init1: 1990 opt: 1990 Z-score: 1159.5 bits: 222.8 E(92320): 8.2e-58
Smith-Waterman score: 1990; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:1-297)
10 20 30 40 50 60
pF1KB6 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYGYDDGYGGEYDDQTYETYDNSYATQTQSVP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYGYDDGYGGEYDDQTYETYDNSYATQTQRTY
250 260 270 280 290 300
310 320 330 340
pF1KB6 EYYDYGHGVSEDAYDSYAPEEWATTSSSLKAPPQRSARGGYREHPYGRY
XP_016 RVCGQ
>>XP_011533817 (OMIM: 610487) KH domain-containing, RNA- (324 aa)
initn: 1800 init1: 1800 opt: 1811 Z-score: 1057.0 bits: 204.0 E(92320): 4.2e-52
Smith-Waterman score: 1811; 91.4% identity (95.0% similar) in 302 aa overlap (1-300:1-302)
10 20 30 40 50 60
pF1KB6 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
190 200 210 220 230 240
250 260 270 280 290
pF1KB6 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYGYDDGY-GGEYDDQTYETYDNSYATQTQS-
::::::::::::::::::::::::::::::. . :: : . :. .: . ....
XP_011 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYASCVSLPGGPADKKINEVLTSSPSPKSNTH
250 260 270 280 290 300
300 310 320 330 340
pF1KB6 VPEYYDYGHGVSEDAYDSYAPEEWATTSSSLKAPPQRSARGGYREHPYGRY
.:
XP_011 IPTSTKLVGGSQAACVNILLPTVT
310 320
>>XP_016865831 (OMIM: 610487) KH domain-containing, RNA- (316 aa)
initn: 1800 init1: 1800 opt: 1810 Z-score: 1056.6 bits: 203.8 E(92320): 4.4e-52
Smith-Waterman score: 1946; 94.6% identity (94.6% similar) in 314 aa overlap (1-297:1-314)
10 20 30 40 50 60
pF1KB6 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
190 200 210 220 230 240
250 260 270 280
pF1KB6 GVPTPRARGAPTVPGYRAPPPPAHEAYEEY-----------------GYDDGYGGEYDDQ
:::::::::::::::::::::::::::::: :::::::::::::
XP_016 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYPSLPLSLFFDTVAKSHQGYDDGYGGEYDDQ
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB6 TYETYDNSYATQTQSVPEYYDYGHGVSEDAYDSYAPEEWATTSSSLKAPPQRSARGGYRE
::::::::::::::
XP_016 TYETYDNSYATQTQRY
310
>>NP_001337551 (OMIM: 610487) KH domain-containing, RNA- (366 aa)
initn: 1800 init1: 1800 opt: 1810 Z-score: 1055.8 bits: 203.9 E(92320): 4.9e-52
Smith-Waterman score: 2309; 95.1% identity (95.1% similar) in 366 aa overlap (1-349:1-366)
10 20 30 40 50 60
pF1KB6 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
190 200 210 220 230 240
250 260 270 280
pF1KB6 GVPTPRARGAPTVPGYRAPPPPAHEAYEEY-----------------GYDDGYGGEYDDQ
:::::::::::::::::::::::::::::: :::::::::::::
NP_001 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYPSLPLSLFFDTVAKSHQGYDDGYGGEYDDQ
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB6 TYETYDNSYATQTQSVPEYYDYGHGVSEDAYDSYAPEEWATTSSSLKAPPQRSARGGYRE
:::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::
NP_001 TYETYDNSYATQTQSVPEYYDYGHGVSEDAYDSYAPEEWATTRSSLKAPPQRSARGGYRE
310 320 330 340 350 360
pF1KB6 HPYGRY
::::::
NP_001 HPYGRY
>>XP_011533822 (OMIM: 610487) KH domain-containing, RNA- (285 aa)
initn: 1890 init1: 1805 opt: 1805 Z-score: 1054.3 bits: 203.3 E(92320): 5.9e-52
Smith-Waterman score: 1805; 99.6% identity (99.6% similar) in 272 aa overlap (1-272:1-272)
10 20 30 40 50 60
pF1KB6 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYGYDDGYGGEYDDQTYETYDNSYATQTQSVP
:::::::::::::::::::::::::::::: :
XP_011 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYCYQRSESYRKCHPSY
250 260 270 280
310 320 330 340
pF1KB6 EYYDYGHGVSEDAYDSYAPEEWATTSSSLKAPPQRSARGGYREHPYGRY
>>XP_016865830 (OMIM: 610487) KH domain-containing, RNA- (322 aa)
initn: 1800 init1: 1800 opt: 1805 Z-score: 1053.6 bits: 203.3 E(92320): 6.5e-52
Smith-Waterman score: 1946; 94.6% identity (94.6% similar) in 314 aa overlap (1-297:1-314)
10 20 30 40 50 60
pF1KB6 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
190 200 210 220 230 240
250 260 270 280
pF1KB6 GVPTPRARGAPTVPGYRAPPPPAHEAYEEY-----------------GYDDGYGGEYDDQ
:::::::::::::::::::::::::::::: :::::::::::::
XP_016 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYPSLPLSLFFDTVAKSHQGYDDGYGGEYDDQ
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB6 TYETYDNSYATQTQSVPEYYDYGHGVSEDAYDSYAPEEWATTSSSLKAPPQRSARGGYRE
::::::::::::::
XP_016 TYETYDNSYATQTQRTYRVCGQ
310 320
>>XP_011533818 (OMIM: 610487) KH domain-containing, RNA- (322 aa)
initn: 1800 init1: 1800 opt: 1805 Z-score: 1053.6 bits: 203.3 E(92320): 6.5e-52
Smith-Waterman score: 1946; 94.6% identity (94.6% similar) in 314 aa overlap (1-297:1-314)
10 20 30 40 50 60
pF1KB6 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
190 200 210 220 230 240
250 260 270 280
pF1KB6 GVPTPRARGAPTVPGYRAPPPPAHEAYEEY-----------------GYDDGYGGEYDDQ
:::::::::::::::::::::::::::::: :::::::::::::
XP_011 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYPSLPLSLFFDTVAKSHQGYDDGYGGEYDDQ
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB6 TYETYDNSYATQTQSVPEYYDYGHGVSEDAYDSYAPEEWATTSSSLKAPPQRSARGGYRE
::::::::::::::
XP_011 TYETYDNSYATQTQRTYRVCGQ
310 320
>>XP_011533821 (OMIM: 610487) KH domain-containing, RNA- (302 aa)
initn: 1800 init1: 1800 opt: 1800 Z-score: 1051.1 bits: 202.8 E(92320): 8.9e-52
Smith-Waterman score: 1800; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270)
10 20 30 40 50 60
pF1KB6 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYGYDDGYGGEYDDQTYETYDNSYATQTQSVP
::::::::::::::::::::::::::::::
XP_011 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYPSLPLSLFFDTVAKSHQCYQRSESYRKCHP
250 260 270 280 290 300
349 residues in 1 query sequences
64369986 residues in 92320 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Oct 24 21:40:38 2019 done: Thu Oct 24 21:40:39 2019
Total Scan time: 4.730 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]