FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6453, 318 aa
  1>>>pF1KB6453 318 - 318 aa - 318 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6508+/-0.000695; mu= 14.9215+/- 0.042
 mean_var=78.2209+/-15.257, 0's: 0 Z-trim(111.0): 6  B-trim: 44 in 1/51
 Lambda= 0.145015
 statistics sampled from 12036 (12038) to 12036 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.37), width:  16
 Scan time:  2.760

The best scores are:                                      opt bits E(32554)
CCDS9550.1 APEX1 gene_id:328|Hs108|chr14           ( 318) 2175 464.0 6.9e-131


>>CCDS9550.1 APEX1 gene_id:328|Hs108|chr14                (318 aa)
 initn: 2175 init1: 2175 opt: 2175  Z-score: 2463.3  bits: 464.0 E(32554): 6.9e-131
Smith-Waterman score: 2175; 99.7% identity (100.0% similar) in 318 aa overlap (1-318:1-318)

               10        20        30        40        50        60
pF1KB6 MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV
       :::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
CCDS95 APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI
              250       260       270       280       290       300

              310        
pF1KB6 RSKALGSDHCPITLYLAL
       ::::::::::::::::::
CCDS95 RSKALGSDHCPITLYLAL
              310        




318 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:00:06 2016 done: Fri Nov  4 23:00:06 2016
 Total Scan time:  2.760 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]