FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6459, 318 aa
  1>>>pF1KB6459 318 - 318 aa - 318 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9815+/-0.000907; mu= 12.2851+/- 0.055
 mean_var=70.0272+/-13.897, 0's: 0 Z-trim(105.8): 20  B-trim: 3 in 1/50
 Lambda= 0.153264
 statistics sampled from 8588 (8598) to 8588 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.64), E-opt: 0.2 (0.264), width:  16
 Scan time:  2.400

The best scores are:                                      opt bits E(32554)
CCDS4345.1 UBLCP1 gene_id:134510|Hs108|chr5        ( 318) 2093 471.8  3e-133


>>CCDS4345.1 UBLCP1 gene_id:134510|Hs108|chr5             (318 aa)
 initn: 2093 init1: 2093 opt: 2093  Z-score: 2505.6  bits: 471.8 E(32554): 3e-133
Smith-Waterman score: 2093; 100.0% identity (100.0% similar) in 318 aa overlap (1-318:1-318)

               10        20        30        40        50        60
pF1KB6 MALPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MALPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LGALKLKPNTKIMMMGTREESLEDVLGPPPDNDDVVNDFDIEDEVVEVENREENLLKISR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LGALKLKPNTKIMMMGTREESLEDVLGPPPDNDDVVNDFDIEDEVVEVENREENLLKISR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RVKEYKVEILNPPREGKKLLVLDVDYTLFDHRSCAETGVELMRPYLHEFLTSAYEDYDIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RVKEYKVEILNPPREGKKLLVLDVDYTLFDHRSCAETGVELMRPYLHEFLTSAYEDYDIV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 IWSATNMKWIEAKMKELGVSTNANYKITFMLDSAAMITVHTPRRGLIDVKPLGVIWGKFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IWSATNMKWIEAKMKELGVSTNANYKITFMLDSAAMITVHTPRRGLIDVKPLGVIWGKFS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 EFYSKKNTIMFDDIGRNFLMNPQNGLKIRPFMKAHLNRDKDKELLKLTQYLKEIAKLDDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EFYSKKNTIMFDDIGRNFLMNPQNGLKIRPFMKAHLNRDKDKELLKLTQYLKEIAKLDDF
              250       260       270       280       290       300

              310        
pF1KB6 LDLNHKYWERYLSKKQGQ
       ::::::::::::::::::
CCDS43 LDLNHKYWERYLSKKQGQ
              310        




318 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 16:51:59 2016 done: Sat Nov  5 16:52:00 2016
 Total Scan time:  2.400 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]