Result of FASTA (ccds) for
pF1KB6484
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6484, 356 aa
1>>>pF1KB6484 356 - 356 aa - 356 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8655+/-0.000902; mu= 13.5601+/- 0.054
mean_var=67.7706+/-13.352, 0's: 0 Z-trim(105.3): 29 B-trim: 63 in 1/50
Lambda= 0.155795
statistics sampled from 8316 (8332) to 8316 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.638), E-opt: 0.2 (0.256), width: 16
Scan time: 2.530
The best scores are: opt bits E(32554)
CCDS9352.1 RFC3 gene_id:5983|Hs108|chr13 ( 356) 2370 541.6 3.7e-154
CCDS45025.1 RFC3 gene_id:5983|Hs108|chr13 ( 305) 1961 449.7 1.5e-126
CCDS41843.2 RFC5 gene_id:5985|Hs108|chr12 ( 319) 252 65.6 6.7e-11
CCDS9185.1 RFC5 gene_id:5985|Hs108|chr12 ( 340) 252 65.6 7.1e-11
>>CCDS9352.1 RFC3 gene_id:5983|Hs108|chr13 (356 aa)
initn: 2370 init1: 2370 opt: 2370 Z-score: 2881.2 bits: 541.6 E(32554): 3.7e-154
Smith-Waterman score: 2370; 100.0% identity (100.0% similar) in 356 aa overlap (1-356:1-356)
10 20 30 40 50 60
pF1KB6 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL
250 260 270 280 290 300
310 320 330 340 350
pF1KB6 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMMF
310 320 330 340 350
>>CCDS45025.1 RFC3 gene_id:5983|Hs108|chr13 (305 aa)
initn: 1953 init1: 1953 opt: 1961 Z-score: 2385.5 bits: 449.7 E(32554): 1.5e-126
Smith-Waterman score: 1961; 97.4% identity (98.7% similar) in 304 aa overlap (1-304:1-303)
10 20 30 40 50 60
pF1KB6 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL
:::::::::::::::::::::::::::::::::::::::::::::::::::::. .:
CCDS45 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKAC-KEES
250 260 270 280 290
310 320 330 340 350
pF1KB6 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMMF
..::
CCDS45 RSCDIF
300
>>CCDS41843.2 RFC5 gene_id:5985|Hs108|chr12 (319 aa)
initn: 359 init1: 223 opt: 252 Z-score: 309.2 bits: 65.6 E(32554): 6.7e-11
Smith-Waterman score: 348; 26.2% identity (54.4% similar) in 340 aa overlap (5-339:2-308)
10 20 30 40 50 60
pF1KB6 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
:.:::: .:. : :.. . ...... .::::.::: :.:: . :. ..::
CCDS41 MVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLY
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
: :..... ::.: :: . : .:. . . :...
CCDS41 -------------------KDKEFGSMV----LELNASDDRGID--IIRGPILSFASTR-
60 70 80 90
130 140 150 160 170 180
pF1KB6 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
: .. ::.:.: :.: .:.:::.::::..::. . :. : :: ::.:: ..:::
CCDS41 --TIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT
100 110 120 130 140
190 200 210 220 230 240
pF1KB6 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
: . : . : : ..: ... . . :. : ..:.:: . .. .
CCDS41 RFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKV
150 160 170 180 190 200
250 260 270 280 290
pF1KB6 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL-
: . : :. :.. . : . . . :: : . .. .:.:.
CCDS41 TEETVYTCTGHP--LKSDIANILDWMLNQDFTTAYRNITELKTL---KGLALHDILTEIH
210 220 230 240 250 260
300 310 320 330 340 350
pF1KB6 --LHNCD--GQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM
.: : .... .. : :.::..:.. .: ...: :
CCDS41 LFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
270 280 290 300 310
pF1KB6 F
>>CCDS9185.1 RFC5 gene_id:5985|Hs108|chr12 (340 aa)
initn: 374 init1: 223 opt: 252 Z-score: 308.7 bits: 65.6 E(32554): 7.1e-11
Smith-Waterman score: 363; 26.4% identity (54.5% similar) in 341 aa overlap (4-339:22-329)
10 20 30 40
pF1KB6 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYG
::.:::: .:. : :.. . ...... .::::.::
CCDS91 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYG
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB6 PSGAGKKTRIMCILRELYGVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGN
: :.:: . :. ..:: : :..... ::.: :: .
CCDS91 PPGTGKTSTILACAKQLY-------------------KDKEFGSMV----LELNASDDRG
70 80 90
110 120 130 140 150 160
pF1KB6 SDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLI
: .:. . . :... : .. ::.:.: :.: .:.:::.::::..::. . :.
CCDS91 ID--IIRGPILSFASTR---TIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFC
100 110 120 130 140 150
170 180 190 200 210 220
pF1KB6 LCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRN
: :: ::.:: ..::: : . : . : : ..: ... . . :. : .
CCDS91 LICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGD
160 170 180 190 200 210
230 240 250 260 270 280
pF1KB6 LRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELL
.:.:: . .. . : . : :. :.. . : . . . ::
CCDS91 MRRALNILQSTNMAFGKVTEETVYTCTGHP--LKSDIANILDWMLNQDFTTAYRNITELK
220 230 240 250 260 270
290 300 310 320 330
pF1KB6 THCIPPEIIMKGLLSEL---LHNCD--GQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVA
: . .. .:.:. .: : .... .. : :.::..:.. .: ...:
CCDS91 TL---KGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIA
280 290 300 310 320
340 350
pF1KB6 KFMALYKKFMEDGLEGMMF
:
CCDS91 AFQVTRDLIVAEA
330 340
356 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:23:33 2016 done: Fri Nov 4 16:23:33 2016
Total Scan time: 2.530 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]