Result of FASTA (omim) for
pF1KB6484
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6484, 356 aa
1>>>pF1KB6484 356 - 356 aa - 356 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8339+/-0.000381; mu= 13.8572+/- 0.024
mean_var=74.5511+/-14.730, 0's: 0 Z-trim(111.9): 46 B-trim: 0 in 0/53
Lambda= 0.148541
statistics sampled from 20598 (20643) to 20598 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.618), E-opt: 0.2 (0.242), width: 16
Scan time: 6.250
The best scores are: opt bits E(85289)
NP_002906 (OMIM: 600405) replication factor C subu ( 356) 2370 517.4 1.9e-146
NP_853536 (OMIM: 600405) replication factor C subu ( 305) 1961 429.7 4e-120
XP_011533477 (OMIM: 600405) PREDICTED: replication ( 297) 1954 428.2 1.1e-119
XP_016876171 (OMIM: 600405) PREDICTED: replication ( 293) 1953 428.0 1.3e-119
XP_016876170 (OMIM: 600405) PREDICTED: replication ( 297) 1953 428.0 1.3e-119
XP_011533476 (OMIM: 600405) PREDICTED: replication ( 297) 1953 428.0 1.3e-119
XP_011533475 (OMIM: 600405) PREDICTED: replication ( 298) 1953 428.0 1.3e-119
XP_016876169 (OMIM: 600405) PREDICTED: replication ( 313) 1953 428.0 1.4e-119
XP_011533474 (OMIM: 600405) PREDICTED: replication ( 343) 1953 428.0 1.5e-119
XP_016876172 (OMIM: 600405) PREDICTED: replication ( 291) 1799 395.0 1.1e-109
NP_001123584 (OMIM: 600407) replication factor C s ( 255) 252 63.5 6.1e-10
NP_853556 (OMIM: 600407) replication factor C subu ( 319) 252 63.5 7.4e-10
XP_011536947 (OMIM: 600407) PREDICTED: replication ( 340) 252 63.5 7.9e-10
XP_011536945 (OMIM: 600407) PREDICTED: replication ( 340) 252 63.5 7.9e-10
NP_031396 (OMIM: 600407) replication factor C subu ( 340) 252 63.5 7.9e-10
NP_001193730 (OMIM: 600407) replication factor C s ( 337) 247 62.4 1.6e-09
XP_016875268 (OMIM: 600407) PREDICTED: replication ( 304) 235 59.8 8.9e-09
NP_002907 (OMIM: 102577) replication factor C subu ( 363) 235 59.9 1e-08
NP_853551 (OMIM: 102577) replication factor C subu ( 363) 235 59.9 1e-08
NP_001265720 (OMIM: 600404) replication factor C s ( 253) 229 58.5 1.9e-08
XP_016867981 (OMIM: 600404) PREDICTED: replication ( 253) 229 58.5 1.9e-08
NP_852136 (OMIM: 600404) replication factor C subu ( 354) 229 58.6 2.5e-08
NP_001265721 (OMIM: 600404) replication factor C s ( 251) 218 56.2 9.4e-08
NP_001265722 (OMIM: 600404) replication factor C s ( 219) 180 48.0 2.4e-05
NP_002905 (OMIM: 600404) replication factor C subu ( 320) 181 48.3 2.8e-05
XP_016867982 (OMIM: 600404) PREDICTED: replication ( 217) 175 46.9 4.9e-05
XP_006716143 (OMIM: 600404) PREDICTED: replication ( 217) 175 46.9 4.9e-05
>>NP_002906 (OMIM: 600405) replication factor C subunit (356 aa)
initn: 2370 init1: 2370 opt: 2370 Z-score: 2750.2 bits: 517.4 E(85289): 1.9e-146
Smith-Waterman score: 2370; 100.0% identity (100.0% similar) in 356 aa overlap (1-356:1-356)
10 20 30 40 50 60
pF1KB6 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL
250 260 270 280 290 300
310 320 330 340 350
pF1KB6 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMMF
310 320 330 340 350
>>NP_853536 (OMIM: 600405) replication factor C subunit (305 aa)
initn: 1953 init1: 1953 opt: 1961 Z-score: 2277.5 bits: 429.7 E(85289): 4e-120
Smith-Waterman score: 1961; 97.4% identity (98.7% similar) in 304 aa overlap (1-304:1-303)
10 20 30 40 50 60
pF1KB6 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_853 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_853 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_853 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_853 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL
:::::::::::::::::::::::::::::::::::::::::::::::::::::. .:
NP_853 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKAC-KEES
250 260 270 280 290
310 320 330 340 350
pF1KB6 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMMF
..::
NP_853 RSCDIF
300
>>XP_011533477 (OMIM: 600405) PREDICTED: replication fac (297 aa)
initn: 1978 init1: 1954 opt: 1954 Z-score: 2269.6 bits: 428.2 E(85289): 1.1e-119
Smith-Waterman score: 1954; 99.3% identity (100.0% similar) in 295 aa overlap (1-295:1-295)
10 20 30 40 50 60
pF1KB6 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL
:::::::::::::::::::::::::::::::::::::::::::::::::::::..
XP_011 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKAVSQ
250 260 270 280 290
310 320 330 340 350
pF1KB6 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMMF
>>XP_016876171 (OMIM: 600405) PREDICTED: replication fac (293 aa)
initn: 1953 init1: 1953 opt: 1953 Z-score: 2268.5 bits: 428.0 E(85289): 1.3e-119
Smith-Waterman score: 1953; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)
10 20 30 40 50 60
pF1KB6 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMK
250 260 270 280 290
310 320 330 340 350
pF1KB6 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMMF
>>XP_016876170 (OMIM: 600405) PREDICTED: replication fac (297 aa)
initn: 1953 init1: 1953 opt: 1953 Z-score: 2268.5 bits: 428.0 E(85289): 1.3e-119
Smith-Waterman score: 1953; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)
10 20 30 40 50 60
pF1KB6 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKVWLL
250 260 270 280 290
310 320 330 340 350
pF1KB6 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMMF
>>XP_011533476 (OMIM: 600405) PREDICTED: replication fac (297 aa)
initn: 1953 init1: 1953 opt: 1953 Z-score: 2268.5 bits: 428.0 E(85289): 1.3e-119
Smith-Waterman score: 1953; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)
10 20 30 40 50 60
pF1KB6 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKVWLL
250 260 270 280 290
310 320 330 340 350
pF1KB6 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMMF
>>XP_011533475 (OMIM: 600405) PREDICTED: replication fac (298 aa)
initn: 1953 init1: 1953 opt: 1953 Z-score: 2268.4 bits: 428.0 E(85289): 1.3e-119
Smith-Waterman score: 1953; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)
10 20 30 40 50 60
pF1KB6 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKLMKRK
250 260 270 280 290
310 320 330 340 350
pF1KB6 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMMF
>>XP_016876169 (OMIM: 600405) PREDICTED: replication fac (313 aa)
initn: 1953 init1: 1953 opt: 1953 Z-score: 2268.1 bits: 428.0 E(85289): 1.4e-119
Smith-Waterman score: 1953; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)
10 20 30 40 50 60
pF1KB6 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKLKDETGL
250 260 270 280 290 300
310 320 330 340 350
pF1KB6 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMMF
XP_016 SMITQSFIDPTHH
310
>>XP_011533474 (OMIM: 600405) PREDICTED: replication fac (343 aa)
initn: 1953 init1: 1953 opt: 1953 Z-score: 2267.5 bits: 428.0 E(85289): 1.5e-119
Smith-Waterman score: 1953; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)
10 20 30 40 50 60
pF1KB6 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKMRNWIQL
250 260 270 280 290 300
310 320 330 340 350
pF1KB6 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMMF
XP_011 IMGATLINSQLPTKKWAVNTAQRTYVSMIKSPQCLFQNLIWSK
310 320 330 340
>>XP_016876172 (OMIM: 600405) PREDICTED: replication fac (291 aa)
initn: 1799 init1: 1799 opt: 1799 Z-score: 2090.2 bits: 395.0 E(85289): 1.1e-109
Smith-Waterman score: 1799; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270)
10 20 30 40 50 60
pF1KB6 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL
::::::::::::::::::::::::::::::
XP_016 TADQEIPETDWEVYLRETANAIVSQQTPQRHVRRNQEAVTYSEDLQRTTCY
250 260 270 280 290
356 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:23:33 2016 done: Fri Nov 4 16:23:34 2016
Total Scan time: 6.250 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]