Result of FASTA (ccds) for
pF1KB6485
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6485, 328 aa
1>>>pF1KB6485 328 - 328 aa - 328 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5574+/-0.000879; mu= 14.3521+/- 0.053
mean_var=68.3590+/-14.055, 0's: 0 Z-trim(106.4): 23 B-trim: 361 in 1/50
Lambda= 0.155123
statistics sampled from 8972 (8989) to 8972 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.276), width: 16
Scan time: 2.790
The best scores are: opt bits E(32554)
CCDS11287.1 RAD51D gene_id:5892|Hs108|chr17 ( 328) 2075 473.4 1.1e-133
CCDS45646.1 RAD51D gene_id:5892|Hs108|chr17 ( 348) 1531 351.6 5.2e-97
CCDS11288.1 RAD51D gene_id:5892|Hs108|chr17 ( 216) 1069 248.1 4.6e-66
CCDS9790.1 RAD51B gene_id:5890|Hs108|chr14 ( 350) 311 78.6 8.2e-15
CCDS9789.1 RAD51B gene_id:5890|Hs108|chr14 ( 384) 311 78.6 8.8e-15
CCDS81815.1 RAD51B gene_id:5890|Hs108|chr14 ( 425) 311 78.6 9.6e-15
>>CCDS11287.1 RAD51D gene_id:5892|Hs108|chr17 (328 aa)
initn: 2075 init1: 2075 opt: 2075 Z-score: 2513.4 bits: 473.4 E(32554): 1.1e-133
Smith-Waterman score: 2075; 100.0% identity (100.0% similar) in 328 aa overlap (1-328:1-328)
10 20 30 40 50 60
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 FSAFPVNGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FSAFPVNGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 VLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 LGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSR
250 260 270 280 290 300
310 320
pF1KB6 QPTGFQEMVDIGTWGTSEQSATLQGDQT
::::::::::::::::::::::::::::
CCDS11 QPTGFQEMVDIGTWGTSEQSATLQGDQT
310 320
>>CCDS45646.1 RAD51D gene_id:5892|Hs108|chr17 (348 aa)
initn: 1824 init1: 1530 opt: 1531 Z-score: 1855.1 bits: 351.6 E(32554): 5.2e-97
Smith-Waterman score: 1783; 85.6% identity (89.4% similar) in 348 aa overlap (1-328:1-348)
10 20 30 40 50
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLA-
::::::::::::::::::::::::::::::::::::::::::::::::. : :.
CCDS45 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKTWRAHSSGNLGG
10 20 30 40 50 60
60 70 80 90 100
pF1KB6 -QFSAFPV--NGADLYEELKTS------TAILS--------TGIGS--LDKLLDAGLYTG
:. :. . . . . :: . : :: :.... ::::::::::::
CCDS45 LQLPQVPAGRSWSGVRNALKKAGLGHGGTDGLSLNAFDERGTAVSTSRLDKLLDAGLYTG
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB6 EVTEIVGGPGSGKTQVCLCMAANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EVTEIVGGPGSGKTQVCLCMAANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQ
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB6 AEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQ
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB6 REGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 REGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDT
250 260 270 280 290 300
290 300 310 320
pF1KB6 IEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSATLQGDQT
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSATLQGDQT
310 320 330 340
>>CCDS11288.1 RAD51D gene_id:5892|Hs108|chr17 (216 aa)
initn: 1069 init1: 1069 opt: 1069 Z-score: 1299.5 bits: 248.1 E(32554): 4.6e-66
Smith-Waterman score: 1141; 65.9% identity (65.9% similar) in 328 aa overlap (1-328:1-216)
10 20 30 40 50 60
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKA-----------
10 20 30 40
70 80 90 100 110 120
pF1KB6 FSAFPVNGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCM
CCDS11 ------------------------------------------------------------
130 140 150 160 170 180
pF1KB6 AANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLD
:::::::::::::::::::
CCDS11 -----------------------------------------EALRRIQVVHAFDIFQMLD
50 60
190 200 210 220 230 240
pF1KB6 VLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARD
70 80 90 100 110 120
250 260 270 280 290 300
pF1KB6 LGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSR
130 140 150 160 170 180
310 320
pF1KB6 QPTGFQEMVDIGTWGTSEQSATLQGDQT
::::::::::::::::::::::::::::
CCDS11 QPTGFQEMVDIGTWGTSEQSATLQGDQT
190 200 210
>>CCDS9790.1 RAD51B gene_id:5890|Hs108|chr14 (350 aa)
initn: 257 init1: 131 opt: 311 Z-score: 379.5 bits: 78.6 E(32554): 8.2e-15
Smith-Waterman score: 326; 28.1% identity (57.6% similar) in 356 aa overlap (11-327:10-348)
10 20 30 40 50 60
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
::..:. . : :.: : :.. . :. . ::::... : ....
CCDS97 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELL-CMVSR
10 20 30 40 50
70 80 90 100 110
pF1KB6 FSAFPVNGADLYEELKT---STAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVC
: .. : . .. : :.::: ...::. : .:. : .:::.: :: :::: :
CCDS97 ACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 LCMA------ANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQV-V
. :. .:.. ::. :.:.:......: ::... ... . : : . :
CCDS97 IMMSILATLPTNMG-GLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKV
120 130 140 150 160 170
180 190 200 210 220
pF1KB6 HAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQREGLAL
: . . .:::... .. ... :.: .:.:..:::..:: . : :. .: .
CCDS97 HLYRELTCDEVLQRIE-SLEEEII-SKG-IKLVILDSVASVVRKEFDAQLQGNLKERNKF
180 190 200 210 220 230
230 240 250 260
pF1KB6 MMQLARELKTLARDLGMAVVVTNHITRDRDSGRL-------KPA----------------
. . : :: ::..... :..::.:: . :: : .::
CCDS97 LAREASSLKYLAEEFSIPVILTNQITT-HLSGALASQADLVSPADDLSLSEGTSGSSCVI
240 250 260 270 280 290
270 280 290 300 310 320
pF1KB6 --LGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSA
:: .:: .::..:. ... ::. .::: : : .: . .:..
CCDS97 AALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAP--FTSFV----YTIKEEGL
300 310 320 330 340
pF1KB6 TLQGDQT
.:::..
CCDS97 VLQGQEKP
350
>>CCDS9789.1 RAD51B gene_id:5890|Hs108|chr14 (384 aa)
initn: 257 init1: 131 opt: 311 Z-score: 378.8 bits: 78.6 E(32554): 8.8e-15
Smith-Waterman score: 321; 28.6% identity (56.8% similar) in 336 aa overlap (11-305:10-333)
10 20 30 40 50 60
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
::..:. . : :.: : :.. . :. . ::::... : . ...
CCDS97 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHEL--LCMVS
10 20 30 40 50
70 80 90 100 110
pF1KB6 FSAFP----VNGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQV
. : . : . : :.::: ...::. : .:. : .:::.: :: ::::
CCDS97 RACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQF
60 70 80 90 100 110
120 130 140 150 160
pF1KB6 CLCMA------ANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQV-
:. :. .:.. ::. :.:.:......: ::... ... . : : .
CCDS97 CIMMSILATLPTNMG-GLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSK
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB6 VHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQREGLA
:: . . .:::... .. ... :.: .:.:..:::..:: . : :. .:
CCDS97 VHLYRELTCDEVLQRIE-SLEEEII-SKG-IKLVILDSVASVVRKEFDAQLQGNLKERNK
180 190 200 210 220 230
230 240 250 260
pF1KB6 LMMQLARELKTLARDLGMAVVVTNHITRDRDSGRL-------KPA---------------
.. . : :: ::..... :..::.:: :: : .::
CCDS97 FLAREASSLKYLAEEFSIPVILTNQITTHL-SGALASQADLVSPADDLSLSEGTSGSSCV
240 250 260 270 280 290
270 280 290 300 310
pF1KB6 ---LGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQP-TGFQEMVDIGTWGTSEQ
:: .:: .::..:. ... ::. .::: : :.:
CCDS97 IAALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAPFTSFVYTIKEEGLVLQET
300 310 320 330 340
320
pF1KB6 SATLQGDQT
CCDS97 TFCSVTQAELNWAPEILPPQPPEQLGLQMCHHTQLIF
350 360 370 380
>>CCDS81815.1 RAD51B gene_id:5890|Hs108|chr14 (425 aa)
initn: 257 init1: 131 opt: 311 Z-score: 378.1 bits: 78.6 E(32554): 9.6e-15
Smith-Waterman score: 321; 28.6% identity (56.8% similar) in 336 aa overlap (11-305:10-333)
10 20 30 40 50 60
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
::..:. . : :.: : :.. . :. . ::::... : . ...
CCDS81 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHEL--LCMVS
10 20 30 40 50
70 80 90 100 110
pF1KB6 FSAFP----VNGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQV
. : . : . : :.::: ...::. : .:. : .:::.: :: ::::
CCDS81 RACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQF
60 70 80 90 100 110
120 130 140 150 160
pF1KB6 CLCMA------ANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQV-
:. :. .:.. ::. :.:.:......: ::... ... . : : .
CCDS81 CIMMSILATLPTNMG-GLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSK
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB6 VHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQREGLA
:: . . .:::... .. ... :.: .:.:..:::..:: . : :. .:
CCDS81 VHLYRELTCDEVLQRIE-SLEEEII-SKG-IKLVILDSVASVVRKEFDAQLQGNLKERNK
180 190 200 210 220 230
230 240 250 260
pF1KB6 LMMQLARELKTLARDLGMAVVVTNHITRDRDSGRL-------KPA---------------
.. . : :: ::..... :..::.:: :: : .::
CCDS81 FLAREASSLKYLAEEFSIPVILTNQITTHL-SGALASQADLVSPADDLSLSEGTSGSSCV
240 250 260 270 280 290
270 280 290 300 310
pF1KB6 ---LGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQP-TGFQEMVDIGTWGTSEQ
:: .:: .::..:. ... ::. .::: : :.:
CCDS81 IAALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAPFTSFVYTIKEEGLVLQVV
300 310 320 330 340
320
pF1KB6 SATLQGDQT
CCDS81 RTVARVSPRSECWSAADSHPSPTFLIPDVVLRKTRNPRLLPSVSMCPPQMHSTVLSSALP
350 360 370 380 390 400
328 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 21:00:24 2016 done: Fri Nov 4 21:00:25 2016
Total Scan time: 2.790 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]