Result of FASTA (omim) for
pF1KB6485
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6485, 328 aa
1>>>pF1KB6485 328 - 328 aa - 328 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1927+/-0.00038; mu= 16.7588+/- 0.024
mean_var=72.7537+/-14.658, 0's: 0 Z-trim(112.7): 61 B-trim: 0 in 0/53
Lambda= 0.150365
statistics sampled from 21735 (21796) to 21735 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.632), E-opt: 0.2 (0.256), width: 16
Scan time: 7.890
The best scores are: opt bits E(85289)
NP_002869 (OMIM: 602954,614291) DNA repair protein ( 328) 2075 459.5 4.4e-129
NP_001136043 (OMIM: 602954,614291) DNA repair prot ( 348) 1531 341.5 1.5e-93
NP_598332 (OMIM: 602954,614291) DNA repair protein ( 216) 1069 241.1 1.6e-63
NP_001308739 (OMIM: 602948) DNA repair protein RAD ( 347) 311 76.8 7.2e-14
NP_001308738 (OMIM: 602948) DNA repair protein RAD ( 347) 311 76.8 7.2e-14
NP_001308747 (OMIM: 602948) DNA repair protein RAD ( 347) 311 76.8 7.2e-14
NP_001308748 (OMIM: 602948) DNA repair protein RAD ( 348) 311 76.8 7.2e-14
NP_002868 (OMIM: 602948) DNA repair protein RAD51 ( 350) 311 76.8 7.2e-14
NP_598194 (OMIM: 602948) DNA repair protein RAD51 ( 350) 311 76.8 7.2e-14
NP_001308741 (OMIM: 602948) DNA repair protein RAD ( 351) 311 76.8 7.3e-14
NP_001308743 (OMIM: 602948) DNA repair protein RAD ( 351) 311 76.8 7.3e-14
NP_598193 (OMIM: 602948) DNA repair protein RAD51 ( 384) 311 76.9 7.8e-14
NP_001308750 (OMIM: 602948) DNA repair protein RAD ( 425) 311 76.9 8.4e-14
XP_016877034 (OMIM: 602948) PREDICTED: DNA repair ( 500) 297 73.9 7.8e-13
XP_011535352 (OMIM: 602948) PREDICTED: DNA repair ( 274) 281 70.3 5.4e-12
XP_011535353 (OMIM: 602948) PREDICTED: DNA repair ( 258) 279 69.8 7e-12
NP_001308744 (OMIM: 602948) DNA repair protein RAD ( 332) 270 67.9 3.3e-11
XP_011520159 (OMIM: 114480,179617,614508) PREDICTE ( 339) 242 61.9 2.3e-09
XP_011520160 (OMIM: 114480,179617,614508) PREDICTE ( 339) 242 61.9 2.3e-09
XP_006720689 (OMIM: 114480,179617,614508) PREDICTE ( 339) 242 61.9 2.3e-09
NP_002866 (OMIM: 114480,179617,614508) DNA repair ( 339) 242 61.9 2.3e-09
XP_011520162 (OMIM: 114480,179617,614508) PREDICTE ( 339) 242 61.9 2.3e-09
XP_011520161 (OMIM: 114480,179617,614508) PREDICTE ( 339) 242 61.9 2.3e-09
XP_011520163 (OMIM: 114480,179617,614508) PREDICTE ( 280) 196 51.8 2e-06
NP_001157742 (OMIM: 114480,179617,614508) DNA repa ( 280) 196 51.8 2e-06
NP_597994 (OMIM: 114480,179617,614508) DNA repair ( 340) 191 50.8 4.9e-06
NP_001157741 (OMIM: 114480,179617,614508) DNA repa ( 340) 191 50.8 4.9e-06
NP_008999 (OMIM: 602721) meiotic recombination pro ( 340) 184 49.3 1.4e-05
XP_011535440 (OMIM: 114480,600675,613972) PREDICTE ( 346) 182 48.9 1.9e-05
NP_001093589 (OMIM: 114480,600675,613972) DNA repa ( 346) 182 48.9 1.9e-05
XP_005268103 (OMIM: 114480,600675,613972) PREDICTE ( 346) 182 48.9 1.9e-05
NP_001093588 (OMIM: 114480,600675,613972) DNA repa ( 346) 182 48.9 1.9e-05
NP_005423 (OMIM: 114480,600675,613972) DNA repair ( 346) 182 48.9 1.9e-05
XP_011528137 (OMIM: 602721) PREDICTED: meiotic rec ( 362) 182 48.9 2e-05
XP_011528136 (OMIM: 602721) PREDICTED: meiotic rec ( 362) 182 48.9 2e-05
XP_006722065 (OMIM: 189960,602774,613390,613399) P ( 342) 163 44.7 0.00033
NP_478123 (OMIM: 189960,602774,613390,613399) DNA ( 376) 163 44.8 0.00035
XP_006722064 (OMIM: 189960,602774,613390,613399) P ( 377) 163 44.8 0.00035
NP_001308746 (OMIM: 602948) DNA repair protein RAD ( 231) 156 43.1 0.00069
XP_016877036 (OMIM: 602948) PREDICTED: DNA repair ( 306) 156 43.2 0.00086
XP_011520164 (OMIM: 114480,179617,614508) PREDICTE ( 215) 154 42.6 0.00088
>>NP_002869 (OMIM: 602954,614291) DNA repair protein RAD (328 aa)
initn: 2075 init1: 2075 opt: 2075 Z-score: 2438.4 bits: 459.5 E(85289): 4.4e-129
Smith-Waterman score: 2075; 100.0% identity (100.0% similar) in 328 aa overlap (1-328:1-328)
10 20 30 40 50 60
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 FSAFPVNGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 FSAFPVNGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 VLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 LGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSR
250 260 270 280 290 300
310 320
pF1KB6 QPTGFQEMVDIGTWGTSEQSATLQGDQT
::::::::::::::::::::::::::::
NP_002 QPTGFQEMVDIGTWGTSEQSATLQGDQT
310 320
>>NP_001136043 (OMIM: 602954,614291) DNA repair protein (348 aa)
initn: 1824 init1: 1530 opt: 1531 Z-score: 1800.3 bits: 341.5 E(85289): 1.5e-93
Smith-Waterman score: 1783; 85.6% identity (89.4% similar) in 348 aa overlap (1-328:1-348)
10 20 30 40 50
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLA-
::::::::::::::::::::::::::::::::::::::::::::::::. : :.
NP_001 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKTWRAHSSGNLGG
10 20 30 40 50 60
60 70 80 90 100
pF1KB6 -QFSAFPV--NGADLYEELKTS------TAILS--------TGIGS--LDKLLDAGLYTG
:. :. . . . . :: . : :: :.... ::::::::::::
NP_001 LQLPQVPAGRSWSGVRNALKKAGLGHGGTDGLSLNAFDERGTAVSTSRLDKLLDAGLYTG
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB6 EVTEIVGGPGSGKTQVCLCMAANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVTEIVGGPGSGKTQVCLCMAANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQ
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB6 AEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQ
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB6 REGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 REGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDT
250 260 270 280 290 300
290 300 310 320
pF1KB6 IEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSATLQGDQT
::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSATLQGDQT
310 320 330 340
>>NP_598332 (OMIM: 602954,614291) DNA repair protein RAD (216 aa)
initn: 1069 init1: 1069 opt: 1069 Z-score: 1261.6 bits: 241.1 E(85289): 1.6e-63
Smith-Waterman score: 1141; 65.9% identity (65.9% similar) in 328 aa overlap (1-328:1-216)
10 20 30 40 50 60
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_598 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKA-----------
10 20 30 40
70 80 90 100 110 120
pF1KB6 FSAFPVNGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCM
NP_598 ------------------------------------------------------------
130 140 150 160 170 180
pF1KB6 AANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLD
:::::::::::::::::::
NP_598 -----------------------------------------EALRRIQVVHAFDIFQMLD
50 60
190 200 210 220 230 240
pF1KB6 VLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_598 VLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARD
70 80 90 100 110 120
250 260 270 280 290 300
pF1KB6 LGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_598 LGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSR
130 140 150 160 170 180
310 320
pF1KB6 QPTGFQEMVDIGTWGTSEQSATLQGDQT
::::::::::::::::::::::::::::
NP_598 QPTGFQEMVDIGTWGTSEQSATLQGDQT
190 200 210
>>NP_001308739 (OMIM: 602948) DNA repair protein RAD51 h (347 aa)
initn: 257 init1: 131 opt: 311 Z-score: 370.0 bits: 76.8 E(85289): 7.2e-14
Smith-Waterman score: 324; 28.2% identity (57.1% similar) in 354 aa overlap (11-325:10-346)
10 20 30 40 50 60
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
::..:. . : :.: : :.. . :. . ::::... : ....
NP_001 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELL-CMVSR
10 20 30 40 50
70 80 90 100 110
pF1KB6 FSAFPVNGADLYEELKT---STAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVC
: .. : . .. : :.::: ...::. : .:. : .:::.: :: :::: :
NP_001 ACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 LCMA------ANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQV-V
. :. .:.. ::. :.:.:......: ::... ... . : : . :
NP_001 IMMSILATLPTNMG-GLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKV
120 130 140 150 160 170
180 190 200 210 220
pF1KB6 HAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQREGLAL
: . . .:::... .. ... :.: .:.:..:::..:: . : :. .: .
NP_001 HLYRELTCDEVLQRIE-SLEEEII-SKG-IKLVILDSVASVVRKEFDAQLQGNLKERNKF
180 190 200 210 220 230
230 240 250 260
pF1KB6 MMQLARELKTLARDLGMAVVVTNHITRDRDSGRL-------KPA----------------
. . : :: ::..... :..::.:: :: : .::
NP_001 LAREASSLKYLAEEFSIPVILTNQITTHL-SGALASQADLVSPADDLSLSEGTSGSSCVI
240 250 260 270 280 290
270 280 290 300 310 320
pF1KB6 --LGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSA
:: .:: .::..:. ... ::. .::: : : .: . .:..
NP_001 AALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAP--FTSFV----YTIKEEGL
300 310 320 330 340
pF1KB6 TLQGDQT
.:::
NP_001 VLQGL
>>NP_001308738 (OMIM: 602948) DNA repair protein RAD51 h (347 aa)
initn: 257 init1: 131 opt: 311 Z-score: 370.0 bits: 76.8 E(85289): 7.2e-14
Smith-Waterman score: 324; 28.2% identity (57.1% similar) in 354 aa overlap (11-325:10-346)
10 20 30 40 50 60
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
::..:. . : :.: : :.. . :. . ::::... : ....
NP_001 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELL-CMVSR
10 20 30 40 50
70 80 90 100 110
pF1KB6 FSAFPVNGADLYEELKT---STAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVC
: .. : . .. : :.::: ...::. : .:. : .:::.: :: :::: :
NP_001 ACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 LCMA------ANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQV-V
. :. .:.. ::. :.:.:......: ::... ... . : : . :
NP_001 IMMSILATLPTNMG-GLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKV
120 130 140 150 160 170
180 190 200 210 220
pF1KB6 HAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQREGLAL
: . . .:::... .. ... :.: .:.:..:::..:: . : :. .: .
NP_001 HLYRELTCDEVLQRIE-SLEEEII-SKG-IKLVILDSVASVVRKEFDAQLQGNLKERNKF
180 190 200 210 220 230
230 240 250 260
pF1KB6 MMQLARELKTLARDLGMAVVVTNHITRDRDSGRL-------KPA----------------
. . : :: ::..... :..::.:: :: : .::
NP_001 LAREASSLKYLAEEFSIPVILTNQITTHL-SGALASQADLVSPADDLSLSEGTSGSSCVI
240 250 260 270 280 290
270 280 290 300 310 320
pF1KB6 --LGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSA
:: .:: .::..:. ... ::. .::: : : .: . .:..
NP_001 AALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAP--FTSFV----YTIKEEGL
300 310 320 330 340
pF1KB6 TLQGDQT
.:::
NP_001 VLQGL
>>NP_001308747 (OMIM: 602948) DNA repair protein RAD51 h (347 aa)
initn: 257 init1: 131 opt: 311 Z-score: 370.0 bits: 76.8 E(85289): 7.2e-14
Smith-Waterman score: 324; 28.2% identity (57.1% similar) in 354 aa overlap (11-325:10-346)
10 20 30 40 50 60
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
::..:. . : :.: : :.. . :. . ::::... : ....
NP_001 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELL-CMVSR
10 20 30 40 50
70 80 90 100 110
pF1KB6 FSAFPVNGADLYEELKT---STAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVC
: .. : . .. : :.::: ...::. : .:. : .:::.: :: :::: :
NP_001 ACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 LCMA------ANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQV-V
. :. .:.. ::. :.:.:......: ::... ... . : : . :
NP_001 IMMSILATLPTNMG-GLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKV
120 130 140 150 160 170
180 190 200 210 220
pF1KB6 HAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQREGLAL
: . . .:::... .. ... :.: .:.:..:::..:: . : :. .: .
NP_001 HLYRELTCDEVLQRIE-SLEEEII-SKG-IKLVILDSVASVVRKEFDAQLQGNLKERNKF
180 190 200 210 220 230
230 240 250 260
pF1KB6 MMQLARELKTLARDLGMAVVVTNHITRDRDSGRL-------KPA----------------
. . : :: ::..... :..::.:: :: : .::
NP_001 LAREASSLKYLAEEFSIPVILTNQITTHL-SGALASQADLVSPADDLSLSEGTSGSSCVI
240 250 260 270 280 290
270 280 290 300 310 320
pF1KB6 --LGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSA
:: .:: .::..:. ... ::. .::: : : .: . .:..
NP_001 AALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAP--FTSFV----YTIKEEGL
300 310 320 330 340
pF1KB6 TLQGDQT
.:::
NP_001 VLQGQ
>>NP_001308748 (OMIM: 602948) DNA repair protein RAD51 h (348 aa)
initn: 257 init1: 131 opt: 311 Z-score: 370.0 bits: 76.8 E(85289): 7.2e-14
Smith-Waterman score: 321; 28.6% identity (56.8% similar) in 336 aa overlap (11-305:10-333)
10 20 30 40 50 60
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
::..:. . : :.: : :.. . :. . ::::... : . ...
NP_001 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHEL--LCMVS
10 20 30 40 50
70 80 90 100 110
pF1KB6 FSAFP----VNGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQV
. : . : . : :.::: ...::. : .:. : .:::.: :: ::::
NP_001 RACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQF
60 70 80 90 100 110
120 130 140 150 160
pF1KB6 CLCMA------ANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQV-
:. :. .:.. ::. :.:.:......: ::... ... . : : .
NP_001 CIMMSILATLPTNMG-GLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSK
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB6 VHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQREGLA
:: . . .:::... .. ... :.: .:.:..:::..:: . : :. .:
NP_001 VHLYRELTCDEVLQRIE-SLEEEII-SKG-IKLVILDSVASVVRKEFDAQLQGNLKERNK
180 190 200 210 220 230
230 240 250 260
pF1KB6 LMMQLARELKTLARDLGMAVVVTNHITRDRDSGRL-------KPA---------------
.. . : :: ::..... :..::.:: :: : .::
NP_001 FLAREASSLKYLAEEFSIPVILTNQITTHL-SGALASQADLVSPADDLSLSEGTSGSSCV
240 250 260 270 280 290
270 280 290 300 310
pF1KB6 ---LGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQP-TGFQEMVDIGTWGTSEQ
:: .:: .::..:. ... ::. .::: : :.:
NP_001 IAALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAPFTSFVYTIKEEGLVLQAG
300 310 320 330 340
320
pF1KB6 SATLQGDQT
NP_001 K
>>NP_002868 (OMIM: 602948) DNA repair protein RAD51 homo (350 aa)
initn: 257 init1: 131 opt: 311 Z-score: 369.9 bits: 76.8 E(85289): 7.2e-14
Smith-Waterman score: 321; 28.6% identity (56.8% similar) in 336 aa overlap (11-305:10-333)
10 20 30 40 50 60
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
::..:. . : :.: : :.. . :. . ::::... : . ...
NP_002 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHEL--LCMVS
10 20 30 40 50
70 80 90 100 110
pF1KB6 FSAFP----VNGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQV
. : . : . : :.::: ...::. : .:. : .:::.: :: ::::
NP_002 RACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQF
60 70 80 90 100 110
120 130 140 150 160
pF1KB6 CLCMA------ANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQV-
:. :. .:.. ::. :.:.:......: ::... ... . : : .
NP_002 CIMMSILATLPTNMG-GLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSK
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB6 VHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQREGLA
:: . . .:::... .. ... :.: .:.:..:::..:: . : :. .:
NP_002 VHLYRELTCDEVLQRIE-SLEEEII-SKG-IKLVILDSVASVVRKEFDAQLQGNLKERNK
180 190 200 210 220 230
230 240 250 260
pF1KB6 LMMQLARELKTLARDLGMAVVVTNHITRDRDSGRL-------KPA---------------
.. . : :: ::..... :..::.:: :: : .::
NP_002 FLAREASSLKYLAEEFSIPVILTNQITTHL-SGALASQADLVSPADDLSLSEGTSGSSCV
240 250 260 270 280 290
270 280 290 300 310
pF1KB6 ---LGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQP-TGFQEMVDIGTWGTSEQ
:: .:: .::..:. ... ::. .::: : :.:
NP_002 IAALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAPFTSFVYTIKEEGLVLQAY
300 310 320 330 340
320
pF1KB6 SATLQGDQT
NP_002 GNS
350
>>NP_598194 (OMIM: 602948) DNA repair protein RAD51 homo (350 aa)
initn: 257 init1: 131 opt: 311 Z-score: 369.9 bits: 76.8 E(85289): 7.2e-14
Smith-Waterman score: 326; 28.1% identity (57.6% similar) in 356 aa overlap (11-327:10-348)
10 20 30 40 50 60
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
::..:. . : :.: : :.. . :. . ::::... : ....
NP_598 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELL-CMVSR
10 20 30 40 50
70 80 90 100 110
pF1KB6 FSAFPVNGADLYEELKT---STAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVC
: .. : . .. : :.::: ...::. : .:. : .:::.: :: :::: :
NP_598 ACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 LCMA------ANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQV-V
. :. .:.. ::. :.:.:......: ::... ... . : : . :
NP_598 IMMSILATLPTNMG-GLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKV
120 130 140 150 160 170
180 190 200 210 220
pF1KB6 HAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQREGLAL
: . . .:::... .. ... :.: .:.:..:::..:: . : :. .: .
NP_598 HLYRELTCDEVLQRIE-SLEEEII-SKG-IKLVILDSVASVVRKEFDAQLQGNLKERNKF
180 190 200 210 220 230
230 240 250 260
pF1KB6 MMQLARELKTLARDLGMAVVVTNHITRDRDSGRL-------KPA----------------
. . : :: ::..... :..::.:: . :: : .::
NP_598 LAREASSLKYLAEEFSIPVILTNQITT-HLSGALASQADLVSPADDLSLSEGTSGSSCVI
240 250 260 270 280 290
270 280 290 300 310 320
pF1KB6 --LGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSA
:: .:: .::..:. ... ::. .::: : : .: . .:..
NP_598 AALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAP--FTSFV----YTIKEEGL
300 310 320 330 340
pF1KB6 TLQGDQT
.:::..
NP_598 VLQGQEKP
350
>>NP_001308741 (OMIM: 602948) DNA repair protein RAD51 h (351 aa)
initn: 257 init1: 131 opt: 311 Z-score: 369.9 bits: 76.8 E(85289): 7.3e-14
Smith-Waterman score: 325; 28.1% identity (57.6% similar) in 356 aa overlap (11-327:10-348)
10 20 30 40 50 60
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
::..:. . : :.: : :.. . :. . ::::... : ....
NP_001 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELL-CMVSR
10 20 30 40 50
70 80 90 100 110
pF1KB6 FSAFPVNGADLYEELKT---STAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVC
: .. : . .. : :.::: ...::. : .:. : .:::.: :: :::: :
NP_001 ACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 LCMA------ANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQV-V
. :. .:.. ::. :.:.:......: ::... ... . : : . :
NP_001 IMMSILATLPTNMG-GLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKV
120 130 140 150 160 170
180 190 200 210 220
pF1KB6 HAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQREGLAL
: . . .:::... .. ... :.: .:.:..:::..:: . : :. .: .
NP_001 HLYRELTCDEVLQRIE-SLEEEII-SKG-IKLVILDSVASVVRKEFDAQLQGNLKERNKF
180 190 200 210 220 230
230 240 250 260
pF1KB6 MMQLARELKTLARDLGMAVVVTNHITRDRDSGRL-------KPA----------------
. . : :: ::..... :..::.:: . :: : .::
NP_001 LAREASSLKYLAEEFSIPVILTNQITT-HLSGALASQADLVSPADDLSLSEGTSGSSCVI
240 250 260 270 280 290
270 280 290 300 310 320
pF1KB6 --LGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSA
:: .:: .::..:. ... ::. .::: : : .: . .:..
NP_001 AALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAP--FTSFV----YTIKEEGL
300 310 320 330 340
pF1KB6 TLQGDQT
.:::..
NP_001 VLQGSREFK
350
328 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 21:00:25 2016 done: Fri Nov 4 21:00:26 2016
Total Scan time: 7.890 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]