FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6492, 357 aa
  1>>>pF1KB6492 357 - 357 aa - 357 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2707+/-0.000368; mu= 7.5767+/- 0.023
 mean_var=141.3876+/-28.406, 0's: 0 Z-trim(117.4): 10  B-trim: 631 in 1/53
 Lambda= 0.107862
 statistics sampled from 29433 (29441) to 29433 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.345), width:  16
 Scan time:  7.420

The best scores are:                                      opt bits E(85289)
NP_002328 (OMIM: 104225,615431) alpha-2-macroglobu ( 357) 2351 377.3 2.8e-104


>>NP_002328 (OMIM: 104225,615431) alpha-2-macroglobulin   (357 aa)
 initn: 2351 init1: 2351 opt: 2351  Z-score: 1993.2  bits: 377.3 E(85289): 2.8e-104
Smith-Waterman score: 2351; 100.0% identity (100.0% similar) in 357 aa overlap (1-357:1-357)

               10        20        30        40        50        60
pF1KB6 MAPRRVRSFLRGLPALLLLLLFLGPWPAASHGGKYSREKNQPKPSPKRESGEEFRMEKLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAPRRVRSFLRGLPALLLLLLFLGPWPAASHGGKYSREKNQPKPSPKRESGEEFRMEKLN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QLWEKAQRLHLPPVRLAELHADLKIQERDELAWKKLKLDGLDEDGEKEARLIRNLNVILA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 QLWEKAQRLHLPPVRLAELHADLKIQERDELAWKKLKLDGLDEDGEKEARLIRNLNVILA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KYGLDGKKDARQVTSNSLSGTQEDGLDDPRLEKLWHKAKTSGKFSGEELDKLWREFLHHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KYGLDGKKDARQVTSNSLSGTQEDGLDDPRLEKLWHKAKTSGKFSGEELDKLWREFLHHK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 EKVHEYNVLLETLSRTEEIHENVISPSDLSDIKGSVLHSRHTELKEKLRSINQGLDRLRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EKVHEYNVLLETLSRTEEIHENVISPSDLSDIKGSVLHSRHTELKEKLRSINQGLDRLRR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 VSHQGYSTEAEFEEPRVIDLWDLAQSANLTDKELEAFREELKHFEAKIEKHNHYQKQLEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VSHQGYSTEAEFEEPRVIDLWDLAQSANLTDKELEAFREELKHFEAKIEKHNHYQKQLEI
              250       260       270       280       290       300

              310       320       330       340       350       
pF1KB6 AHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDLSGRISRARHNEL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDLSGRISRARHNEL
              310       320       330       340       350       




357 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:09:39 2016 done: Fri Nov  4 23:09:40 2016
 Total Scan time:  7.420 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]