FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6493, 331 aa
  1>>>pF1KB6493 331 - 331 aa - 331 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9593+/-0.000864; mu= 17.1008+/- 0.052
 mean_var=55.9670+/-10.819, 0's: 0 Z-trim(105.9): 13  B-trim: 0 in 0/49
 Lambda= 0.171439
 statistics sampled from 8648 (8653) to 8648 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.266), width:  16
 Scan time:  2.550

The best scores are:                                      opt bits E(32554)
CCDS669.1 RABGGTB gene_id:5876|Hs108|chr1          ( 331) 2284 573.0 1.1e-163
CCDS4116.1 PGGT1B gene_id:5229|Hs108|chr5          ( 377)  452 120.0 3.1e-27
CCDS9769.1 FNTB gene_id:2342|Hs108|chr14           ( 437)  421 112.3 7.2e-25


>>CCDS669.1 RABGGTB gene_id:5876|Hs108|chr1               (331 aa)
 initn: 2284 init1: 2284 opt: 2284  Z-score: 3052.0  bits: 573.0 E(32554): 1.1e-163
Smith-Waterman score: 2284; 100.0% identity (100.0% similar) in 331 aa overlap (1-331:1-331)

               10        20        30        40        50        60
pF1KB6 MGTPQKDVIIKSDAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MGTPQKDVIIKSDAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GQLHRMNREEILAFIKSCQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDVNKVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GQLHRMNREEILAFIKSCQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDVNKVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EYVKGLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 EYVKGLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 FGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 FGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 YSWWVLASLKIIGRLHWIDREKLRNFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 YSWWVLASLKIIGRLHWIDREKLRNFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSL
              250       260       270       280       290       300

              310       320       330 
pF1KB6 LGEEQIKPVNPVFCMPEEVLQRVNVQPELVS
       :::::::::::::::::::::::::::::::
CCDS66 LGEEQIKPVNPVFCMPEEVLQRVNVQPELVS
              310       320       330 

>>CCDS4116.1 PGGT1B gene_id:5229|Hs108|chr5               (377 aa)
 initn: 463 init1: 252 opt: 452  Z-score: 602.3  bits: 120.0 E(32554): 3.1e-27
Smith-Waterman score: 477; 30.3% identity (60.6% similar) in 317 aa overlap (39-323:40-354)

       10        20        30        40        50        60        
pF1KB6 IIKSDAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNR
                                     :   :  :..  ...:. .:.. .:  .:.
CCDS41 AGSGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNK
      10        20        30        40        50        60         

       70                  80               90                100  
pF1KB6 EEILAFIKSCQ----------HECG-------GISASIGHDP---------HLLYTLSAV
       ..:. .: : :          ..::       ::  . .. :         :. .: ...
CCDS41 DDIIEWIYSLQVLPTEDRSNLNRCGFRGSSYLGIPFNPSKAPGTAHPYDSGHIAMTYTGL
      70        80        90       100       110       120         

             110       120       130        140       150       160
pF1KB6 QILT-LYDSINVIDVNKVVEYVKGLQKEDGSFAGDIWG-EIDTRFSFCAVATLALLGKLD
       . :. : :... .. .  .  ...:: ::::: .   : : : :: .::     .:.. .
CCDS41 SCLVILGDDLSRVNKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWS
     130       140       150       160       170       180         

              170       180       190       200       210          
pF1KB6 AINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDL----LG
       .....::: ..   :..:.:..   : :::.:. .:  . : . ..:..: :.     . 
CCDS41 GMDMKKAITYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIK
     190       200       210       220       230       240         

        220       230       240       250       260       270      
pF1KB6 WWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRNFILACQDEETG
        :   ::  ..: .:::.:  :.:::.:: :.::..  ... . :: ::.::. ::. .:
CCDS41 RWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVG
     250         260       270       280       290       300       

        280       290       300       310       320       330      
pF1KB6 GFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVNPVFCMPEEVLQRVNVQPELVS     
       :::  : .  : .:. ::: ::::. :  :  :.:.. .  .. .:.             
CCDS41 GFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLLDLHQSWKTKDSK
       310       320       330       340       350       360       

CCDS41 QCSENVHIST
       370       

>>CCDS9769.1 FNTB gene_id:2342|Hs108|chr14                (437 aa)
 initn: 490 init1: 209 opt: 421  Z-score: 559.9  bits: 112.3 E(32554): 7.2e-25
Smith-Waterman score: 521; 29.9% identity (59.5% similar) in 338 aa overlap (21-321:76-410)

                         10        20        30          40        
pF1KB6           MGTPQKDVIIKSDAPDTLLLEKHADYIASYGSKK--DDYEYCMSEYLRMS
                                     :::  :. . : ..  : :: :. .  :  
CCDS97 IEQAKVEEKIQEVFSSYKFNHLVPRLVLQREKHFHYL-KRGLRQLTDAYE-CL-DASRPW
          50        60        70        80         90         100  

       50        60         70        80        90       100       
pF1KB6 GIYWGLTVMDLMGQ-LHRMNREEILAFIKSCQHECGGISASIGHDPHLLYTLSAVQILTL
         :: :  ..:. . . ..   ..  :.. ::   ::.... :. :::  : .::. : .
CCDS97 LCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCI
            110       120       130       140       150       160  

          110       120       130       140       150       160    
pF1KB6 Y---DSINVIDVNKVVEYVKGLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINV
           .. ..:. .:...:. .:.. ::::   . ::.:.: ..::... .: . .     
CCDS97 IGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLF
            170       180       190       200       210       220  

          170       180       190       200       210       220    
pF1KB6 EKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQL
       : . :..  :.:..::.:  :: :.:.:  .:  . :.: .. ...:   :  :.  ::.
CCDS97 EGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQM
            230       240       250       260       270       280  

           230       240       250                    260       270
pF1KB6 P-SGGLNGRPEKLPDVCYSWWVLASLKIIGRL------------HWI-DREKLRNFILAC
          ::..:: .:: : :::.:  . : .. :             ::.  .. :...:: :
CCDS97 RFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMC
            290       300       310       320       330       340  

              280       290       300                       310    
pF1KB6 QDEETGGFADRPGDMVDPFHTLFGIAGLSL--------------LG--EEQIKPVNPVFC
        .  .::. :.::   : .:: . ..:::.              ::  :. ..:..::. 
CCDS97 CQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFGSGAMLHDVVLGVPENALQPTHPVYN
            350       360       370       380       390       400  

           320       330                  
pF1KB6 M-PEEVLQRVNVQPELVS                 
       . :..:.:                           
CCDS97 IGPDKVIQATTYFLQKPVPGFEELKDETSAEPATD
            410       420       430       




331 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:02:13 2016 done: Fri Nov  4 21:02:14 2016
 Total Scan time:  2.550 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]