Result of FASTA (omim) for
pF1KB6499
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6499, 103 aa
1>>>pF1KB6499 103 - 103 aa - 103 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8049+/-0.000325; mu= 12.4107+/- 0.020
mean_var=60.3848+/-11.932, 0's: 0 Z-trim(115.6): 22 B-trim: 385 in 1/49
Lambda= 0.165048
statistics sampled from 26133 (26153) to 26133 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.307), width: 16
Scan time: 4.050
The best scores are: opt bits E(85289)
NP_068803 (OMIM: 602826) histone H4 [Homo sapiens] ( 103) 663 165.5 1.3e-41
NP_778224 (OMIM: 615069) histone H4 [Homo sapiens] ( 103) 663 165.5 1.3e-41
NP_003530 (OMIM: 602823) histone H4 [Homo sapiens] ( 103) 663 165.5 1.3e-41
NP_003529 (OMIM: 602822) histone H4 [Homo sapiens] ( 103) 663 165.5 1.3e-41
NP_003535 (OMIM: 602829) histone H4 [Homo sapiens] ( 103) 663 165.5 1.3e-41
NP_003533 (OMIM: 602827) histone H4 [Homo sapiens] ( 103) 663 165.5 1.3e-41
NP_003534 (OMIM: 602828) histone H4 [Homo sapiens] ( 103) 663 165.5 1.3e-41
NP_003486 (OMIM: 602833) histone H4 [Homo sapiens] ( 103) 663 165.5 1.3e-41
NP_003539 (OMIM: 142750) histone H4 [Homo sapiens] ( 103) 663 165.5 1.3e-41
NP_003531 (OMIM: 602824) histone H4 [Homo sapiens] ( 103) 663 165.5 1.3e-41
NP_003536 (OMIM: 602830) histone H4 [Homo sapiens] ( 103) 663 165.5 1.3e-41
NP_003537 (OMIM: 602831) histone H4 [Homo sapiens] ( 103) 663 165.5 1.3e-41
NP_003532 (OMIM: 602825) histone H4 [Homo sapiens] ( 103) 663 165.5 1.3e-41
NP_003538 (OMIM: 602832) histone H4-like protein t ( 98) 489 124.1 3.8e-29
>>NP_068803 (OMIM: 602826) histone H4 [Homo sapiens] (103 aa)
initn: 663 init1: 663 opt: 663 Z-score: 867.8 bits: 165.5 E(85289): 1.3e-41
Smith-Waterman score: 663; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)
10 20 30 40 50 60
pF1KB6 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
10 20 30 40 50 60
70 80 90 100
pF1KB6 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
:::::::::::::::::::::::::::::::::::::::::::
NP_068 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
70 80 90 100
>>NP_778224 (OMIM: 615069) histone H4 [Homo sapiens] (103 aa)
initn: 663 init1: 663 opt: 663 Z-score: 867.8 bits: 165.5 E(85289): 1.3e-41
Smith-Waterman score: 663; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)
10 20 30 40 50 60
pF1KB6 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_778 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
10 20 30 40 50 60
70 80 90 100
pF1KB6 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
:::::::::::::::::::::::::::::::::::::::::::
NP_778 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
70 80 90 100
>>NP_003530 (OMIM: 602823) histone H4 [Homo sapiens] (103 aa)
initn: 663 init1: 663 opt: 663 Z-score: 867.8 bits: 165.5 E(85289): 1.3e-41
Smith-Waterman score: 663; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)
10 20 30 40 50 60
pF1KB6 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
10 20 30 40 50 60
70 80 90 100
pF1KB6 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
:::::::::::::::::::::::::::::::::::::::::::
NP_003 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
70 80 90 100
>>NP_003529 (OMIM: 602822) histone H4 [Homo sapiens] (103 aa)
initn: 663 init1: 663 opt: 663 Z-score: 867.8 bits: 165.5 E(85289): 1.3e-41
Smith-Waterman score: 663; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)
10 20 30 40 50 60
pF1KB6 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
10 20 30 40 50 60
70 80 90 100
pF1KB6 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
:::::::::::::::::::::::::::::::::::::::::::
NP_003 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
70 80 90 100
>>NP_003535 (OMIM: 602829) histone H4 [Homo sapiens] (103 aa)
initn: 663 init1: 663 opt: 663 Z-score: 867.8 bits: 165.5 E(85289): 1.3e-41
Smith-Waterman score: 663; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)
10 20 30 40 50 60
pF1KB6 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
10 20 30 40 50 60
70 80 90 100
pF1KB6 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
:::::::::::::::::::::::::::::::::::::::::::
NP_003 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
70 80 90 100
>>NP_003533 (OMIM: 602827) histone H4 [Homo sapiens] (103 aa)
initn: 663 init1: 663 opt: 663 Z-score: 867.8 bits: 165.5 E(85289): 1.3e-41
Smith-Waterman score: 663; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)
10 20 30 40 50 60
pF1KB6 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
10 20 30 40 50 60
70 80 90 100
pF1KB6 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
:::::::::::::::::::::::::::::::::::::::::::
NP_003 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
70 80 90 100
>>NP_003534 (OMIM: 602828) histone H4 [Homo sapiens] (103 aa)
initn: 663 init1: 663 opt: 663 Z-score: 867.8 bits: 165.5 E(85289): 1.3e-41
Smith-Waterman score: 663; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)
10 20 30 40 50 60
pF1KB6 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
10 20 30 40 50 60
70 80 90 100
pF1KB6 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
:::::::::::::::::::::::::::::::::::::::::::
NP_003 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
70 80 90 100
>>NP_003486 (OMIM: 602833) histone H4 [Homo sapiens] (103 aa)
initn: 663 init1: 663 opt: 663 Z-score: 867.8 bits: 165.5 E(85289): 1.3e-41
Smith-Waterman score: 663; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)
10 20 30 40 50 60
pF1KB6 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
10 20 30 40 50 60
70 80 90 100
pF1KB6 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
:::::::::::::::::::::::::::::::::::::::::::
NP_003 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
70 80 90 100
>>NP_003539 (OMIM: 142750) histone H4 [Homo sapiens] (103 aa)
initn: 663 init1: 663 opt: 663 Z-score: 867.8 bits: 165.5 E(85289): 1.3e-41
Smith-Waterman score: 663; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)
10 20 30 40 50 60
pF1KB6 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
10 20 30 40 50 60
70 80 90 100
pF1KB6 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
:::::::::::::::::::::::::::::::::::::::::::
NP_003 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
70 80 90 100
>>NP_003531 (OMIM: 602824) histone H4 [Homo sapiens] (103 aa)
initn: 663 init1: 663 opt: 663 Z-score: 867.8 bits: 165.5 E(85289): 1.3e-41
Smith-Waterman score: 663; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)
10 20 30 40 50 60
pF1KB6 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
10 20 30 40 50 60
70 80 90 100
pF1KB6 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
:::::::::::::::::::::::::::::::::::::::::::
NP_003 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
70 80 90 100
103 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 01:00:46 2016 done: Sat Nov 5 01:00:47 2016
Total Scan time: 4.050 Total Display time: -0.040
Function used was FASTA [36.3.4 Apr, 2011]