FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6504, 382 aa
  1>>>pF1KB6504 382 - 382 aa - 382 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1840+/-0.000302; mu= 17.6312+/- 0.019
 mean_var=70.1544+/-14.369, 0's: 0 Z-trim(118.0): 11  B-trim: 1796 in 2/52
 Lambda= 0.153125
 statistics sampled from 30589 (30595) to 30589 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.359), width:  16
 Scan time:  9.120

The best scores are:                                      opt bits E(85289)
NP_036545 (OMIM: 607065) glutaminyl-peptide cyclot ( 361) 1081 247.6 3.5e-65


>>NP_036545 (OMIM: 607065) glutaminyl-peptide cyclotrans  (361 aa)
 initn: 1064 init1: 473 opt: 1081  Z-score: 1291.1  bits: 247.6 E(85289): 3.5e-65
Smith-Waterman score: 1081; 47.8% identity (71.4% similar) in 364 aa overlap (27-382:7-361)

               10        20        30        40         50         
pF1KB6 MRSGGRGRPRLRLGERGLMEPLLPPKRRLLPRVRLLPLLLALAVGS-AFYTIWSGWHRRT
                                 ::..  ..:: :. ::  .: .     :.:    
NP_036                     MAGGRHRRVVGTLHLLLLVAALPWASRGVSPSASAW----
                                   10        20        30          

      60        70        80        90       100       110         
pF1KB6 EELPLGRELRVPLIGSLPEARLRRVVGQLDPQRLWSTYLRPLLVVRTPGSPGNLQVRKFL
          :  .. . : :  :  . ::...   . ...:.. :.:::. : :::::.  .:. .
NP_036 ---PEEKNYHQPAI--LNSSALRQIAEGTSISEMWQNDLQPLLIERYPGSPGSYAARQHI
            40          50        60        70        80        90 

     120       130       140       150       160       170         
pF1KB6 EATLRSLTAGWHVELDPFTASTPLGPVDFGNVVATLDPRAARHLTLACHYDSKLFPP-GS
          .. : : : .:.: : ..:: :  .:.:...::.: : :::.:::::::: :   ..
NP_036 MQRIQRLQADWVLEIDTFLSQTPYGYRSFSNIISTLNPTAKRHLVLACHYDSKYFSHWNN
             100       110       120       130       140       150 

      180       190       200          210       220       230     
pF1KB6 TPFVGATDSAVPCALLLELAQALD---LELSRAKKQAAPVTLQLLFLDGEEALKEWGPKD
         ::::::::::::..::::.:::   : :. .. .   ..:::.:.:::::. .:.:.:
NP_036 RVFVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQD
             160       170       180       190       200       210 

         240       250          260       270       280       290  
pF1KB6 SLYGSRHLAQLMESIPHSPGP---TRIQAIELFMLLDLLGAPNPTFYSHFPRTVRWFHRL
       :::::::::  : : :: ::    .......:..::::.::::::: . :: ..:::.::
NP_036 SLYGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNSARWFERL
             220       230       240       250       260       270 

            300       310       320       330       340       350  
pF1KB6 RSIEKRLHRLNLLQSHPQEVMYFQPGEPFGSVEDDHIPFLRRGVPVLHLISTPFPAVWHT
       ..::..::.:.::..:  :  :::     : ..::::::::::::::::: .::: ::::
NP_036 QAIEHELHELGLLKDHSLEGRYFQNYSYGGVIQDDHIPFLRRGVPVLHLIPSPFPEVWHT
             280       290       300       310       320       330 

            360       370       380  
pF1KB6 PADTEVNLHPPTVHNLCRILAVFLAEYLGL
         :.: ::   :. :: .:: ::. ::: :
NP_036 MDDNEENLDESTIDNLNKILQVFVLEYLHL
             340       350       360 




382 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:10:10 2016 done: Fri Nov  4 17:10:11 2016
 Total Scan time:  9.120 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]