Result of FASTA (ccds) for
pF1KB6510
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6510, 384 aa
1>>>pF1KB6510 384 - 384 aa - 384 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6124+/-0.000718; mu= 15.1719+/- 0.043
mean_var=66.9714+/-13.571, 0's: 0 Z-trim(108.8): 21 B-trim: 34 in 1/50
Lambda= 0.156722
statistics sampled from 10458 (10477) to 10458 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.322), width: 16
Scan time: 3.040
The best scores are: opt bits E(32554)
CCDS534.1 NSUN4 gene_id:387338|Hs108|chr1 ( 384) 2594 595.2 3.3e-170
CCDS57996.1 NSUN4 gene_id:387338|Hs108|chr1 ( 335) 2274 522.8 1.8e-148
CCDS2927.1 NSUN3 gene_id:63899|Hs108|chr3 ( 340) 565 136.4 3.7e-32
CCDS58202.1 NOP2 gene_id:4839|Hs108|chr12 ( 628) 262 68.0 2.7e-11
CCDS44811.1 NOP2 gene_id:4839|Hs108|chr12 ( 808) 262 68.0 3.4e-11
CCDS58203.1 NOP2 gene_id:4839|Hs108|chr12 ( 812) 262 68.0 3.4e-11
CCDS58204.1 NOP2 gene_id:4839|Hs108|chr12 ( 845) 262 68.0 3.5e-11
>>CCDS534.1 NSUN4 gene_id:387338|Hs108|chr1 (384 aa)
initn: 2594 init1: 2594 opt: 2594 Z-score: 3169.2 bits: 595.2 E(32554): 3.3e-170
Smith-Waterman score: 2594; 100.0% identity (100.0% similar) in 384 aa overlap (1-384:1-384)
10 20 30 40 50 60
pF1KB6 MAALTLRGVRELLKRVDLATVPRRHRYKKKWAATEPKFPAVRLALQNFDMTYSVQFGDLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MAALTLRGVRELLKRVDLATVPRRHRYKKKWAATEPKFPAVRLALQNFDMTYSVQFGDLW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PSIRVSLLSEQKYGALVNNFAAWDHVSAKLEQLSAKDFVNEAISHWELQSEGGQSAAPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PSIRVSLLSEQKYGALVNNFAAWDHVSAKLEQLSAKDFVNEAISHWELQSEGGQSAAPSP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 ASWACSPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ASWACSPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 CAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 CAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 WGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 WGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 PGGHVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFSSCQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PGGHVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFSSCQV
310 320 330 340 350 360
370 380
pF1KB6 GELVIPNLMANFGPMYFCKMRRLT
::::::::::::::::::::::::
CCDS53 GELVIPNLMANFGPMYFCKMRRLT
370 380
>>CCDS57996.1 NSUN4 gene_id:387338|Hs108|chr1 (335 aa)
initn: 2274 init1: 2274 opt: 2274 Z-score: 2779.2 bits: 522.8 E(32554): 1.8e-148
Smith-Waterman score: 2274; 100.0% identity (100.0% similar) in 335 aa overlap (50-384:1-335)
20 30 40 50 60 70
pF1KB6 TVPRRHRYKKKWAATEPKFPAVRLALQNFDMTYSVQFGDLWPSIRVSLLSEQKYGALVNN
::::::::::::::::::::::::::::::
CCDS57 MTYSVQFGDLWPSIRVSLLSEQKYGALVNN
10 20 30
80 90 100 110 120 130
pF1KB6 FAAWDHVSAKLEQLSAKDFVNEAISHWELQSEGGQSAAPSPASWACSPNLRCFTFDRGDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 FAAWDHVSAKLEQLSAKDFVNEAISHWELQSEGGQSAAPSPASWACSPNLRCFTFDRGDI
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB6 SRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 SRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRN
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB6 LAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRVLVDVPCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 LAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRVLVDVPCT
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB6 TDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 TDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEY
220 230 240 250 260 270
320 330 340 350 360 370
pF1KB6 VVQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFSSCQVGELVIPNLMANFGPMYFCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 VVQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFSSCQVGELVIPNLMANFGPMYFCK
280 290 300 310 320 330
380
pF1KB6 MRRLT
:::::
CCDS57 MRRLT
>>CCDS2927.1 NSUN3 gene_id:63899|Hs108|chr3 (340 aa)
initn: 534 init1: 206 opt: 565 Z-score: 690.7 bits: 136.4 E(32554): 3.7e-32
Smith-Waterman score: 614; 35.4% identity (64.1% similar) in 345 aa overlap (42-382:19-333)
20 30 40 50 60 70
pF1KB6 LLKRVDLATVPRRHRYKKKWAATEPKFPAVRLALQNFDMTYSVQFGDLWPSIRVSLLSEQ
...:..:. :: ..:: : ..: : : .
CCDS29 MLTQLKAKSEGKLAKQICKVVLDHFEKQYSKELGDAWNTVREILTSPS
10 20 30 40
80 90 100 110 120
pF1KB6 --KYGALVNNFAAWDHVSAKLEQLSAKDFVNEAISHWELQSEGGQSAAPSPASWACSPNL
.:..:.: : . .:: ::. .. .. :.:. :. ..
CCDS29 CWQYAVLLNRF----NYPFELE----KDL---HLKGYHTLSQGSLPNYPK--------SV
50 60 70 80
130 140 150 160 170 180
pF1KB6 RCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTL
.:. ..: .:.: : .. .:::..:::::::::: :. :. :::::::::::..
CCDS29 KCY-LSRTP-GRIPSERHQIGNLKKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKSI
90 100 110 120 130 140
190 200 210 220 230 240
pF1KB6 ALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTY
:::: .: : :. . :. :.. :.:..:. . : ..:. :::: :. . . .
CCDS29 ALLQCACPGYLHCNEYDSLRLRWLRQTLESFIPQPLI--NVIKVSELDGRKMGDAQPEMF
150 160 170 180 190 200
250 260 270 280 290 300
pF1KB6 DRVLVDVPCTTDRHSLHEEENNIFKRS-RKKERQILPVLQVQLLAAGLLATKPGGHVVYS
:.::::.::..:: : ... : : : ..:. ::.::..:: ... : .::: .:::
CCDS29 DKVLVDAPCSNDRSWLFSSDSQ--KASCRISQRRNLPLLQIELLRSAIKALRPGGILVYS
210 220 230 240 250 260
310 320 330 340 350 360
pF1KB6 TCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFSSCQ-VGELVIPN
::.::. .:. :.. :.: .. .:. . :. . :. : : . : : ::::.
CCDS29 TCTLSKAENQDVIS---EILNSHGNIMPM--DIKGIARTCSHDFTFAPTGQECGLLVIPD
270 280 290 300 310
370 380
pF1KB6 LMANFGPMYFCKMRRLT
.:::: :...
CCDS29 KGKAWGPMYVAKLKKSWSTGKW
320 330 340
>>CCDS58202.1 NOP2 gene_id:4839|Hs108|chr12 (628 aa)
initn: 274 init1: 131 opt: 262 Z-score: 316.3 bits: 68.0 E(32554): 2.7e-11
Smith-Waterman score: 274; 33.3% identity (62.8% similar) in 180 aa overlap (155-326:362-529)
130 140 150 160 170 180
pF1KB6 CSPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAP
:.:. :.:.:::.::. : . .::.: ::
CCDS58 DPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAP
340 350 360 370 380 390
190 200 210 220 230 240
pF1KB6 GGKTLALLQTGCCRNLA-ANDLSPSRIARLQKILHSYVPEEIRDG-NQVRVTSWDGRKWG
:::: . : .. ::: . :. . :: : : ... .. .:::..
CCDS58 GGKTSYMAQLMKNTGVILANDANAERLKSVVGNLH-------RLGVTNTIISHYDGRQFP
400 410 420 430 440
250 260 270 280 290
pF1KB6 ELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPV--LQVQLLAAGL----
.. : .::::.:.::. .. .. . .. : :..:: :: .:: ...
CCDS58 KVVGG-FDRVLLDAPCSGT--GVISKDPAV--KTNKDEKDILRCAHLQKELLLSAIDSVN
450 460 470 480 490
300 310 320 330 340 350
pF1KB6 LATKPGGHVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFS
..: ::..:: :::.. .::.::. :..
CCDS58 ATSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSL
500 510 520 530 540 550
>>CCDS44811.1 NOP2 gene_id:4839|Hs108|chr12 (808 aa)
initn: 274 init1: 131 opt: 262 Z-score: 314.5 bits: 68.0 E(32554): 3.4e-11
Smith-Waterman score: 274; 33.3% identity (62.8% similar) in 180 aa overlap (155-326:362-529)
130 140 150 160 170 180
pF1KB6 CSPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAP
:.:. :.:.:::.::. : . .::.: ::
CCDS44 DPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAP
340 350 360 370 380 390
190 200 210 220 230 240
pF1KB6 GGKTLALLQTGCCRNLA-ANDLSPSRIARLQKILHSYVPEEIRDG-NQVRVTSWDGRKWG
:::: . : .. ::: . :. . :: : : ... .. .:::..
CCDS44 GGKTSYMAQLMKNTGVILANDANAERLKSVVGNLH-------RLGVTNTIISHYDGRQFP
400 410 420 430 440
250 260 270 280 290
pF1KB6 ELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPV--LQVQLLAAGL----
.. : .::::.:.::. .. .. . .. : :..:: :: .:: ...
CCDS44 KVVGG-FDRVLLDAPCSGT--GVISKDPAV--KTNKDEKDILRCAHLQKELLLSAIDSVN
450 460 470 480 490
300 310 320 330 340 350
pF1KB6 LATKPGGHVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFS
..: ::..:: :::.. .::.::. :..
CCDS44 ATSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSL
500 510 520 530 540 550
>>CCDS58203.1 NOP2 gene_id:4839|Hs108|chr12 (812 aa)
initn: 274 init1: 131 opt: 262 Z-score: 314.5 bits: 68.0 E(32554): 3.4e-11
Smith-Waterman score: 274; 33.3% identity (62.8% similar) in 180 aa overlap (155-326:366-533)
130 140 150 160 170 180
pF1KB6 CSPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAP
:.:. :.:.:::.::. : . .::.: ::
CCDS58 DPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAP
340 350 360 370 380 390
190 200 210 220 230 240
pF1KB6 GGKTLALLQTGCCRNLA-ANDLSPSRIARLQKILHSYVPEEIRDG-NQVRVTSWDGRKWG
:::: . : .. ::: . :. . :: : : ... .. .:::..
CCDS58 GGKTSYMAQLMKNTGVILANDANAERLKSVVGNLH-------RLGVTNTIISHYDGRQFP
400 410 420 430 440
250 260 270 280 290
pF1KB6 ELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPV--LQVQLLAAGL----
.. : .::::.:.::. .. .. . .. : :..:: :: .:: ...
CCDS58 KVVGG-FDRVLLDAPCSGT--GVISKDPAV--KTNKDEKDILRCAHLQKELLLSAIDSVN
450 460 470 480 490 500
300 310 320 330 340 350
pF1KB6 LATKPGGHVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFS
..: ::..:: :::.. .::.::. :..
CCDS58 ATSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSL
510 520 530 540 550 560
>>CCDS58204.1 NOP2 gene_id:4839|Hs108|chr12 (845 aa)
initn: 270 init1: 131 opt: 262 Z-score: 314.2 bits: 68.0 E(32554): 3.5e-11
Smith-Waterman score: 274; 33.3% identity (62.8% similar) in 180 aa overlap (155-326:399-566)
130 140 150 160 170 180
pF1KB6 CSPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAP
:.:. :.:.:::.::. : . .::.: ::
CCDS58 DPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAP
370 380 390 400 410 420
190 200 210 220 230 240
pF1KB6 GGKTLALLQTGCCRNLA-ANDLSPSRIARLQKILHSYVPEEIRDG-NQVRVTSWDGRKWG
:::: . : .. ::: . :. . :: : : ... .. .:::..
CCDS58 GGKTSYMAQLMKNTGVILANDANAERLKSVVGNLH-------RLGVTNTIISHYDGRQFP
430 440 450 460 470 480
250 260 270 280 290
pF1KB6 ELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPV--LQVQLLAAGL----
.. : .::::.:.::. .. .. . .. : :..:: :: .:: ...
CCDS58 KVVGG-FDRVLLDAPCSGT--GVISKDPAV--KTNKDEKDILRCAHLQKELLLSAIDSVN
490 500 510 520 530
300 310 320 330 340 350
pF1KB6 LATKPGGHVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFS
..: ::..:: :::.. .::.::. :..
CCDS58 ATSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSL
540 550 560 570 580 590
384 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:17:31 2016 done: Fri Nov 4 16:17:31 2016
Total Scan time: 3.040 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]